RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 WEE2P0C1S8 567 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 DPYDQ12882 1025 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 TUSC3Q13454 348 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 PTPROQ16827 1216 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 RTP2Q5QGT7 225 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 JADE1Q6IE81 842 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 EFCAB13Q8IY85 973 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 SYCP3Q8IZU3 236 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 UBN1Q9NPG3 1134 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 CLEC1BQ9P126 229 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 KANSL3Q9P2N6 904 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 CITO14578 2027 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 PTPRJQ12913 1337 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 OGTO15294 1046 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 PRPF40AO75400 957 aaKnown RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 B3GAT3O94766 335 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 RSPO2Q6UXX9 243 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 CEP57Q86XR8 500 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 CBWD2Q8IUF1 395 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 RNF168Q8IYW5 571 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 C12orf76Q8N812 135 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 MRPL43Q8N983 215 aaKnown RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 ACCSQ96QU6 501 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 TLE6Q9H808 572 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 UBE2ZQ9H832 354 aaPredicted RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 CNTN3Q9P232 1028 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 SEL1LQ9UBV2 794 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 AGO2Q9UKV8 859 aaKnown RBP13.13□□□□□ -0.31
SCFD1-201ENST00000311943 STYXL1Q9Y6J8 313 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 ANK1P16157 1881 aa13.13□□□□□ -0.31
SCFD1-201ENST00000311943 VWA8A3KMH1 1905 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 RPN1P04843 607 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 CNPP09543 421 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 EPCAMP16422 314 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 YARSP54577 528 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 KRT17Q04695 432 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 HSP90AA2PQ14568 343 aaPredicted RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 PTPN14Q15678 1187 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 UPP1Q16831 310 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 FUT10Q6P4F1 479 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 CNNM4Q6P4Q7 775 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 DDX53Q86TM3 631 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 HACE1Q8IYU2 909 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 KCNN1Q92952 543 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 KIF12Q96FN5 646 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 RNF216Q9NWF9 866 aaPredicted RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 LMCD1Q9NZU5 365 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 ADAM28Q9UKQ2 775 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 TIMM13Q9Y5L4 95 aaPredicted RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 TADA2AO75478 443 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 IL9P15248 144 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 AMPD3Q01432 767 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 ZBTB6Q15916 424 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 CTC1Q2NKJ3 1217 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 ZNF507Q8TCN5 953 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 HLA-CQ95604 372 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 POP1Q99575 1024 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 TMEM175Q9BSA9 504 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 PUF60Q9UHX1 559 aaKnown RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 CIZ1Q9ULV3 898 aaPredicted RBP13.12□□□□□ -0.31
SCFD1-201ENST00000311943 HCFC2Q9Y5Z7 792 aa13.12□□□□□ -0.31
SCFD1-201ENST00000311943 SPTLC1O15269 473 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 LILRB3O75022 631 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 ADRB2P07550 413 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 CLTAP09496 248 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 CTSAP10619 480 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 PPM1AP35813 382 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 CASP4P49662 377 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 CYP2J2P51589 502 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 ADAM15Q13444 863 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 FAM171A1Q5VUB5 890 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 IPO9Q96P70 1041 aaKnown RBP13.11□□□□□ -0.31
SCFD1-201ENST00000311943 RPF1Q9H9Y2 349 aaKnown RBP13.11□□□□□ -0.31
SCFD1-201ENST00000311943 PDE11AQ9HCR9 933 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 AGPAT3Q9NRZ7 376 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 PCDHB13Q9Y5F0 798 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 TRIOO75962 3097 aa13.11□□□□□ -0.31
SCFD1-201ENST00000311943 GOLGA6L4A6NEF3 574 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 H0YCG3 227 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PODXLO00592 558 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 CLASP2O75122 1294 aaKnown RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 KCNE1P15382 129 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 TKTP29401 623 aaKnown RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 KCNC3Q14003 757 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 POSTNQ15063 836 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 DUSP6Q16828 381 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 TIGD5Q53EQ6 642 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 KIAA0319Q5VV43 1072 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 ARMCX5Q6P1M9 558 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PALB2Q86YC2 1186 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PLEKHO2Q8TD55 490 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 LMAN2LQ9H0V9 348 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 GZF1Q9H116 711 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 TOPORSQ9NS56 1045 aaPredicted RBP13.1□□□□□ -0.31
SCFD1-201ENST00000311943 THEGQ9P2T0 379 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PCDHA5Q9Y5H7 936 aa13.1□□□□□ -0.31
SCFD1-201ENST00000311943 PDCD11Q14690 1871 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms