RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ARMCX3Q9UH62 379 aaPredicted RBP19.7■□□□□ 0.74
HMGA1-201ENST00000311487 GIT1Q9Y2X7 761 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 CITO14578 2027 aa19.7■□□□□ 0.74
HMGA1-201ENST00000311487 LCHNA4D1U4 455 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 AP5Z1O43299 807 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 ADCY5O95622 1261 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 CDK11BP21127 795 aaKnown RBP19.69■□□□□ 0.74
HMGA1-201ENST00000311487 SOX4Q06945 474 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-201ENST00000311487 CT47A1Q5JQC4 288 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-201ENST00000311487 C1orf220Q5T0J3 134 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 HERC6Q8IVU3 1022 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 FNBP1Q96RU3 617 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 PAAF1Q9BRP4 392 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 MTMR12Q9C0I1 747 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 ELAC1Q9H777 363 aaKnown RBP19.69■□□□□ 0.74
HMGA1-201ENST00000311487 KIAA1586Q9HCI6 787 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 CHD7Q9P2D1 2997 aa19.69■□□□□ 0.74
HMGA1-201ENST00000311487 CASTOR2A6NHX0 329 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 F8W810 466 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 PES1O00541 588 aaKnown RBP19.68■□□□□ 0.74
HMGA1-201ENST00000311487 EFCAB14O75071 495 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 MTIF2P46199 727 aaKnown RBP19.68■□□□□ 0.74
HMGA1-201ENST00000311487 GCLMP48507 274 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 RNASELQ05823 741 aaKnown RBP19.68■□□□□ 0.74
HMGA1-201ENST00000311487 BFSP1Q12934 665 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 MYBPC2Q14324 1141 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 NOMO2Q5JPE7 1267 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 SPRED2Q7Z698 418 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 PARD3BQ8TEW8 1205 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 THAP9Q9H5L6 903 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 TBC1D13Q9NVG8 400 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 DNAJB4Q9UDY4 337 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 SMTNL1A8MU46 457 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 KIAA0391O15091 583 aaKnown RBP19.68■□□□□ 0.74
HMGA1-201ENST00000311487 LRRN2O75325 713 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 DDHD2O94830 711 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 GJB5O95377 273 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 KRT13P13646 458 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 PBX2P40425 430 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 PPP3CAQ08209 521 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 PSMD6Q15008 389 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 TCP11X2Q5H9J9 407 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 TAB2Q9NYJ8 693 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 CNTN3Q9P232 1028 aa19.68■□□□□ 0.74
HMGA1-201ENST00000311487 MAGEC2Q9UBF1 373 aaPredicted RBP19.68■□□□□ 0.74
HMGA1-201ENST00000311487 NT5C1B-RDH14C9J2C7 533 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 GOLGA6L19H0YKK7 550 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 IKBKBO14920 756 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 SLC16A3O15427 465 aaKnown RBP19.67■□□□□ 0.74
HMGA1-201ENST00000311487 TLL1O43897 1013 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 CAVIN2O95810 425 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 PLCB2Q00722 1185 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 TMEM132DQ14C87 1099 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 RASIP1Q5U651 963 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 CDKAL1Q5VV42 579 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 TMEM174Q8WUU8 243 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 VPS16Q9H269 839 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 ANK1P16157 1881 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 CHD9Q3L8U1 2897 aa19.67■□□□□ 0.74
HMGA1-201ENST00000311487 ZC3H11AO75152 810 aaKnown RBP eCLIP19.66■□□□□ 0.742e-11■□□□□ 8.9
HMGA1-201ENST00000311487 FGFR1OPO95684 399 aaKnown RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 THP07101 528 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 BTG3Q14201 252 aaPredicted RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 KYAT1Q16773 422 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 INTS8Q75QN2 995 aaKnown RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 ZSCAN30Q86W11 494 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 HASPINQ8TF76 798 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 MTIF3Q9H2K0 278 aaKnown RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 PPEF2O14830 753 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 KRT19P08727 400 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 KRT31Q15323 416 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 SPOUT1Q5T280 376 aaKnown RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 FRMD5Q7Z6J6 570 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 SLC35C1Q96A29 364 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 PPP1R10Q96QC0 940 aaKnown RBP19.66■□□□□ 0.74
HMGA1-201ENST00000311487 UBN1Q9NPG3 1134 aa19.66■□□□□ 0.74
HMGA1-201ENST00000311487 CLSTN1O94985 981 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 ARHGEF15O94989 841 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 IL18RAPO95256 599 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 ZNF18P17022 549 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 NAB2Q15742 525 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 CBWD6Q4V339 395 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 CBWD3Q5JTY5 395 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 CBWD5Q5RIA9 395 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 URGCPQ8TCY9 931 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 ZNF689Q96CS4 500 aaPredicted RBP19.65■□□□□ 0.74
HMGA1-201ENST00000311487 TUBGCP2Q9BSJ2 902 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 MKNK1Q9BUB5 465 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 TMEM117Q9H0C3 514 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 PLEKHA5Q9HAU0 1116 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 MTUS1Q9ULD2 1270 aa19.65■□□□□ 0.74
HMGA1-201ENST00000311487 COLQQ9Y215 455 aaPredicted RBP19.65■□□□□ 0.74
HMGA1-201ENST00000311487 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.65■□□□□ 0.74
HMGA1-201ENST00000311487 TMEM191BP0C7N4 346 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 BIRC3Q13489 604 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 XKR4Q5GH76 650 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 FOXR2Q6PJQ5 311 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 TRIM59Q8IWR1 403 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 TDHQ8IZJ6 230 aa19.64■□□□□ 0.74
HMGA1-201ENST00000311487 SLC9A7Q96T83 725 aa19.64■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms