RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SPTLC2O15270 562 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 CLDN3O15551 220 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 B3GAT3O94766 335 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 GLUD1P00367 558 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 SPATA31D3P0C874 917 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 CXCL8P10145 99 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 TNFSF9P41273 254 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 STAT6P42226 847 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 LIG4P49917 911 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 UPP1Q16831 310 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 ZC2HC1CQ53FD0 456 aaPredicted RBP17.82■□□□□ 0.44
LSM1-201ENST00000311351 ZBTB41Q5SVQ8 909 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 SLC39A4Q6P5W5 647 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 CD300LGQ6UXG3 332 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 SPATA31D4Q6ZUB0 917 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 PALB2Q86YC2 1186 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 TMEM130Q8N3G9 435 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 PDILTQ8N807 584 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 KCNN1Q92952 543 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 C18orf25Q96B23 403 aaPredicted RBP17.82■□□□□ 0.44
LSM1-201ENST00000311351 ZNF396Q96N95 335 aaPredicted RBP17.82■□□□□ 0.44
LSM1-201ENST00000311351 TTPALQ9BTX7 342 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.82■□□□□ 0.44
LSM1-201ENST00000311351 DAXXQ9UER7 740 aaPredicted RBP17.82■□□□□ 0.44
LSM1-201ENST00000311351 ANK1P16157 1881 aa17.82■□□□□ 0.44
LSM1-201ENST00000311351 TISP43B9A030 160 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 TMEM189-UBE2V1I3L0A0 370 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 PIGRP01833 764 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 ALADP13716 330 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 KCNE1P15382 129 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 MTHFRP42898 656 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 PSMD5Q16401 504 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 SLC10A6Q3KNW5 377 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 TMEM31Q5JXX7 168 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 CCDC73Q6ZRK6 1079 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 MAP4K3Q8IVH8 894 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 PIK3R5Q8WYR1 880 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 DDX12PQ92771 950 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 DNAJC19Q96DA6 116 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 RIPOR3Q96MK2 946 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 UROC1Q96N76 676 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 NECTIN4Q96NY8 510 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 IKZF4Q9H2S9 585 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 RAPGEFL1Q9UHV5 662 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 TECTAO75443 2155 aa17.81■□□□□ 0.44
LSM1-201ENST00000311351 PODXLO00592 558 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 TGM5O43548 720 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 FAM189A1O60320 539 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 RFPL2O75678 378 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 YEATS4O95619 227 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 BRCC3P46736 316 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 SPAG1Q07617 926 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 DCLRE1AQ6PJP8 1040 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 SV2BQ7L1I2 683 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 GPR65Q8IYL9 337 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 LNX1Q8TBB1 728 aaPredicted RBP17.8■□□□□ 0.44
LSM1-201ENST00000311351 LRFN3Q9BTN0 628 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 SLC38A7Q9NVC3 462 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 FNIP2Q9P278 1114 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 TUBGCP4Q9UGJ1 667 aa17.8■□□□□ 0.44
LSM1-201ENST00000311351 C2CD4DB7Z1M9 353 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 ANKRD63C9JTQ0 380 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 ADAM12O43184 909 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 PPP6R2O75170 966 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 FGFR3P22607 806 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 TKTP29401 623 aaKnown RBP17.79■□□□□ 0.44
LSM1-201ENST00000311351 GTF2BQ00403 316 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 CREMQ03060 361 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 ELAVL2Q12926 359 aaKnown RBP17.79■□□□□ 0.44
LSM1-201ENST00000311351 HERC4Q5GLZ8 1057 aaPredicted RBP17.79■□□□□ 0.44
LSM1-201ENST00000311351 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.79■□□□□ 0.44
LSM1-201ENST00000311351 GPR149Q86SP6 731 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 CLSTN3Q9BQT9 956 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 TBC1D7Q9P0N9 293 aa17.79■□□□□ 0.44
LSM1-201ENST00000311351 MYO10Q9HD67 2058 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 DOCK6Q96HP0 2047 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 GPR37L1O60883 481 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 CLTAP09496 248 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 COL9A1P20849 921 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 SCP2P22307 547 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 ENOX2Q16206 610 aaKnown RBP17.78■□□□□ 0.44
LSM1-201ENST00000311351 ATAT1Q5SQI0 421 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 LILRA6Q6PI73 481 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 SHC4Q6S5L8 630 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 STAMQ92783 540 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 DDX27Q96GQ7 796 aaKnown RBP17.78■□□□□ 0.44
LSM1-201ENST00000311351 MSTO1Q9BUK6 570 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 ST6GALNAC4Q9H4F1 302 aa17.78■□□□□ 0.44
LSM1-201ENST00000311351 A0A0B4J269 797 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 CCDC195A0A1B0GUA6 201 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 TTC26A0AVF1 554 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 OGTO15294 1046 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 CUTAO60888 179 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 PPP1R37O75864 691 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 IDEP14735 1019 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 PPP2R3AQ06190 1150 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 E2F4Q16254 413 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 CMASQ8NFW8 434 aaPredicted RBP17.77■□□□□ 0.44
LSM1-201ENST00000311351 FGFBP2Q9BYJ0 223 aa17.77■□□□□ 0.44
LSM1-201ENST00000311351 MRPL44Q9H9J2 332 aaKnown RBP17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms