RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 PPP1R2P3Q6NXS1 205 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 DNAJC9Q8WXX5 260 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ARL8AQ96BM9 186 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 TTC25Q96NG3 672 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ZBTB18Q99592 522 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ZWILCHQ9H900 591 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ZSWIM5Q9P217 1185 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 PCDHB6Q9Y5E3 794 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 MROH7Q68CQ1 1323 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 KPNA7A9QM74 516 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 HNRNPDLO14979 420 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 PRPF3O43395 683 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 NPM3O75607 178 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 AARSP49588 968 aaKnown RBP eCLIP8.65□□□□□ -1.02
VPS41-202ENST00000310301 C1QTNF8P60827 252 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 BAATQ14032 418 aaPredicted RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 CAPRIN1Q14444 709 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 ZNF589Q86UQ0 364 aaPredicted RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 SH2D3CQ8N5H7 860 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ACCSQ96QU6 501 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 SLC40A1Q9NP59 571 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ZNF302Q9NR11 478 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 EMILIN3Q9NT22 766 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 FAM50BQ9Y247 325 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 GSG1L2A8MUP6 293 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 H0Y626 953 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 KRT38O76015 456 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 TJP3O95049 919 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 TRIM16O95361 564 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ATP1A1P05023 1023 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 COPS2P61201 443 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 GRM4Q14833 912 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 MDH1BQ5I0G3 518 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ACBD5Q5T8D3 534 aaPredicted RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 MCPH1Q8NEM0 835 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 HSPH1Q92598 858 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 BPIFA3Q9BQP9 254 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 DDX47Q9H0S4 455 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 DLGAP2Q9P1A6 1054 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 ADGRG1Q9Y653 693 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 FAM208AQ9UK61 1670 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 CCDC22O60826 627 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 VCAM1P19320 739 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 CORO7P57737 925 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 QRICH1Q2TAL8 776 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 RESP18Q5W5W9 173 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 LRRC8EQ6NSJ5 796 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 RINLQ6ZS11 566 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 OR9Q1Q8NGQ5 310 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 CALR3Q96L12 384 aaKnown RBP8.65□□□□□ -1.02
VPS41-202ENST00000310301 HEMGNQ9BXL5 484 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 SPATC1LQ9H0A9 340 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 C2orf40Q9H1Z8 148 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 SNX25Q9H3E2 840 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 SYNPO2Q9UMS6 1093 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 PCDHA6Q9UN73 950 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 PCDHA8Q9Y5H6 950 aa8.65□□□□□ -1.02
VPS41-202ENST00000310301 SPDYE5A6NIY4 337 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 PRPSAP2O60256 369 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 ZRANB2O95218 330 aaKnown RBP eCLIP8.65□□□□□ -1.03
VPS41-202ENST00000310301 ENO1P06733 434 aaKnown RBP8.65□□□□□ -1.03
VPS41-202ENST00000310301 SURF1Q15526 300 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 TWF2Q6IBS0 349 aaKnown RBP8.65□□□□□ -1.03
VPS41-202ENST00000310301 TRAF7Q6Q0C0 670 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 DHX40Q8IX18 779 aaKnown RBP8.65□□□□□ -1.03
VPS41-202ENST00000310301 ZNF784Q8NCA9 323 aaPredicted RBP8.65□□□□□ -1.03
VPS41-202ENST00000310301 SEC16BQ96JE7 1060 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 ADNPQ9H2P0 1102 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 MAP2P11137 1827 aaKnown RBP8.65□□□□□ -1.03
VPS41-202ENST00000310301 MRC1P22897 1456 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 WDR19Q8NEZ3 1342 aa8.65□□□□□ -1.03
VPS41-202ENST00000310301 TBC1D12O60347 775 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 HMGCRP04035 888 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 PLCG1P19174 1290 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 FGFR2P21802 821 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 KLRK1P26718 216 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 TSPY1Q01534 308 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 MTERF2Q49AM1 385 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SEPT1Q8WYJ6 367 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 FAM81BQ96LP2 452 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 WDR24Q96S15 920 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 VPS11Q9H270 941 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 GOLPH3LQ9H4A5 285 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 FAM8A1Q9UBU6 413 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 DPP7Q9UHL4 492 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 TMX2Q9Y320 296 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 LRRC53A6NM62 1247 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 PHF20L1A8MW92 1017 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SH2B2O14492 632 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 HOXA13P31271 388 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 MRPS35P82673 323 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 UBE3AQ05086 875 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 AGGF1Q8N302 714 aaeCLIP8.64□□□□□ -1.033e-7■■■□□ 16.4
VPS41-202ENST00000310301 TMEM199Q8N511 208 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 APBA2Q99767 749 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 APOL6Q9BWW8 343 aa8.64□□□□□ -1.03
VPS41-202ENST00000310301 GEMIN8Q9NWZ8 242 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 ALDH18A1P54886 795 aaKnown RBP8.64□□□□□ -1.03
VPS41-202ENST00000310301 ZNF280AP59817 542 aaPredicted RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms