RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SNX24Q9Y343 169 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 LRRC36Q1X8D7 754 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 METTL23Q86XA0 190 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 EME1Q96AY2 570 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 WNT8AQ9H1J5 351 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 SENP2Q9HC62 589 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 NSMCE4AQ9NXX6 385 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 ANAPC7Q9UJX3 599 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 HNRNPRO43390 633 aaKnown RBP10.4□□□□□ -0.75
COL6A3-201ENST00000295550 ADRA2BP18089 450 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 COPB2P35606 906 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 SERPINB4P48594 390 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 DSG1Q02413 1049 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 MED21Q13503 144 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 SLC18A3Q16572 532 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 ARHGAP27Q6ZUM4 889 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 NEDD1Q8NHV4 660 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 NRBP2Q9NSY0 501 aa10.4□□□□□ -0.75
COL6A3-201ENST00000295550 PDXKO00764 312 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 XPOTO43592 962 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 SLC13A1Q9BZW2 595 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 PCIF1Q9H4Z3 704 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 LMCD1Q9NZU5 365 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 GPC5P78333 572 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 EDRF1Q3B7T1 1238 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 MMGT1Q8N4V1 131 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CELF1Q92879 486 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 MTRQ99707 1265 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 VPS11Q9H270 941 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 ARL2BPQ9Y2Y0 163 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 MAP1BP46821 2468 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 C16orf96A6NNT2 1141 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 RPS6KA4O75676 772 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 ANGPT1Q15389 498 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 PPP6R3Q5H9R7 873 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 TLK2Q86UE8 772 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 NCAPG2Q86XI2 1143 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 PPP1R36Q96LQ0 422 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 LMO7Q8WWI1 1683 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CALB1P05937 261 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 IRX2Q9BZI1 471 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 NPHS2Q9NP85 383 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 TTC7AQ9ULT0 858 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CCDC88CQ9P219 2028 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L15C9J2P7 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L13C9JLJ4 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L11C9JVI0 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L18D6R9N7 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L22D6RA61 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L17D6RBQ6 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L19D6RCP7 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L20D6RJB6 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 AP5Z1O43299 807 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CDK17Q00537 523 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L24Q0WX57 530 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 NT5DC1Q5TFE4 455 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L6PQ6QN14 398 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 POTEAQ6S8J7 498 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 MMTAG2Q9BU76 263 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 INTS2Q9H0H0 1204 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 HSPA9P38646 679 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 PRAMEP78395 509 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 TRAPPC11Q7Z392 1133 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 ATP11CQ8NB49 1132 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 XXYLT1Q8NBI6 393 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 LRRC1Q9BTT6 524 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 BEGAINQ9BUH8 593 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 NXF1Q9UBU9 619 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 MLH1P40692 756 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM25Q14258 630 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 FASTKD1Q53R41 847 aaKnown RBP10.39□□□□□ -0.75
COL6A3-201ENST00000295550 ULK4Q96C45 1275 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 DTX3LQ8TDB6 740 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 ASZ1Q8WWH4 475 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 DNAJC9Q8WXX5 260 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CNBD2Q96M20 576 aa10.39□□□□□ -0.75
COL6A3-201ENST00000295550 CCND1P24385 295 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 BTKQ06187 659 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 FOXP4Q8IVH2 680 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 INPP5DQ92835 1189 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MRPL1Q9BYD6 325 aaKnown RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 NFKBIAP25963 317 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ST3GAL1Q11201 340 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 WDR93Q6P2C0 686 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 FAM196AQ6ZSG2 479 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 RNF139Q8WU17 664 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 ERGIC2Q96RQ1 377 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 GCOM2Q9BZD3 368 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 NDEL1Q9GZM8 345 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 CNGB3Q9NQW8 809 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 KLHL8Q9P2G9 620 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 MKL2Q9ULH7 1088 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 USP17L10C9JJH3 530 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 E5RI56 91 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 AGGF1Q8N302 714 aaeCLIP10.38□□□□□ -0.75
COL6A3-201ENST00000295550 LRRC4Q9HBW1 653 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 KCND2Q9NZV8 630 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 FBXL5Q9UKA1 691 aa10.38□□□□□ -0.75
COL6A3-201ENST00000295550 SYNDIG1LA6NDD5 238 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms