RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 C6orf229H3BNL8 230 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 DDX3XO00571 662 aaKnown RBP eCLIP13.96□□□□□ -0.173e-11■■□□□ 12
NUP54-201ENST00000264883 HNRNPRO43390 633 aaKnown RBP13.96□□□□□ -0.17
NUP54-201ENST00000264883 TBX10O75333 385 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 SPATA31D3P0C874 917 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 VCAM1P19320 739 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 CYP3A7P24462 503 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 MOGSQ13724 837 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 NFIL3Q16649 462 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 ZNF568Q3ZCX4 644 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 CERKLQ49MI3 558 aaPredicted RBP13.96□□□□□ -0.17
NUP54-201ENST00000264883 TAF1BQ53T94 588 aaPredicted RBP13.96□□□□□ -0.17
NUP54-201ENST00000264883 ACSBG2Q5FVE4 666 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 TTC27Q6P3X3 843 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 SEPT14Q6ZU15 432 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 SPATA31D4Q6ZUB0 917 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 PRELID2Q8N945 189 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 LBHD1Q9BQE6 289 aaPredicted RBP13.96□□□□□ -0.17
NUP54-201ENST00000264883 FGFBP2Q9BYJ0 223 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 MIS12Q9H081 205 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 TBC1D7Q9P0N9 293 aa13.96□□□□□ -0.17
NUP54-201ENST00000264883 ANKRD63C9JTQ0 380 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 TBX3O15119 743 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 TMCC1O94876 653 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 CCDC166P0CW27 439 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 CCNFP41002 786 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 DEUP1Q05D60 604 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 PPATQ06203 517 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 ZNF543Q08ER8 600 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 DNAJC3Q13217 504 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 TNIP1Q15025 636 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 WDR72Q3MJ13 1102 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 Q4G0T1 1027 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 SPDYAQ5MJ70 313 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 CCDC137Q6PK04 289 aaKnown RBP13.96□□□□□ -0.18
NUP54-201ENST00000264883 MIGA2Q7L4E1 593 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 SRRM1Q8IYB3 904 aaKnown RBP13.96□□□□□ -0.18
NUP54-201ENST00000264883 DTX3LQ8TDB6 740 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 MBOAT7Q96N66 472 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 MIPEPQ99797 713 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 ATF5Q9Y2D1 282 aaPredicted RBP13.96□□□□□ -0.18
NUP54-201ENST00000264883 FOCADQ5VW36 1801 aa13.96□□□□□ -0.18
NUP54-201ENST00000264883 ADGRA3Q8IWK6 1321 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 IGKV6D-41A0A0C4DH26 115 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 HNRNPCL1O60812 293 aaKnown RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 CDK7P50613 346 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 AADACL2Q6P093 401 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 CYFIP1Q7L576 1253 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 STMN2Q93045 179 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 OLFM3Q96PB7 478 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 TUBGCP5Q96RT8 1024 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 CADM1Q9BY67 442 aaKnown RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 ASCC2Q9H1I8 757 aaPredicted RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 SYNCQ9H7C4 482 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 JMJD4Q9H9V9 463 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 ETNK2Q9NVF9 386 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 DDX43Q9NXZ2 648 aaKnown RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 TMOD4Q9NZQ9 345 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 STX18Q9P2W9 335 aaKnown RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 ZNF212Q9UDV6 495 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 ZFP69BQ9UJL9 534 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 FRMPD2Q68DX3 1309 aaPredicted RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 ZBTB5O15062 677 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 MAGEB2O15479 319 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 ALAS1P13196 640 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 HADHBP55084 474 aaKnown RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 CALCOCO2Q13137 446 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 MAP7Q14244 749 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 KBTBD2Q8IY47 623 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 CYP4X1Q8N118 509 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 SLC30A5Q8TAD4 765 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 CTNNBL1Q8WYA6 563 aaPredicted RBP13.95□□□□□ -0.18
NUP54-201ENST00000264883 ALG3Q92685 438 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 COA1Q9GZY4 146 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 PSTPIP2Q9H939 334 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 SIX2Q9NPC8 291 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 KRT82Q9NSB4 513 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 TBK1Q9UHD2 729 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 CIDEBQ9UHD4 219 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 PTPN22Q9Y2R2 807 aa13.95□□□□□ -0.18
NUP54-201ENST00000264883 ARFGEF1Q9Y6D6 1849 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 GAKO14976 1311 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 SYNGAP1Q96PV0 1343 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 POTEB3A0JP26 581 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 POTECB2RU33 542 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 GGPS1O95749 300 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 RFX1P22670 979 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 CTNNA2P26232 953 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 CHRNA5P30532 468 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 TMEM62Q0P6H9 643 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 POTEBQ6S5H4 581 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 DPP8Q6V1X1 898 aaPredicted RBP13.94□□□□□ -0.18
NUP54-201ENST00000264883 SYT2Q8N9I0 419 aaPredicted RBP13.94□□□□□ -0.18
NUP54-201ENST00000264883 C7orf43Q8WVR3 580 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 VTI1AQ96AJ9 217 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 DDX27Q96GQ7 796 aaKnown RBP13.94□□□□□ -0.18
NUP54-201ENST00000264883 SAR1AQ9NR31 198 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 IL1RAPL1Q9NZN1 696 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 GCNT4Q9P109 453 aa13.94□□□□□ -0.18
NUP54-201ENST00000264883 DNM3Q9UQ16 869 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms