RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 GOLGA8TH3BQL2 631 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 STK4Q13043 487 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 RAD9BQ6WBX8 426 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 ARHGAP18Q8N392 663 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 RRN3P2A6NIE6 340 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 CTDNEP1O95476 244 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 KRT14P02533 472 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 CSF1RP07333 972 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 ADORA2BP29275 332 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 SREBF2Q12772 1141 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 SF3B3Q15393 1217 aaKnown RBP20.18■□□□□ 0.82
UPF1-201ENST00000262803 VPS72Q15906 364 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 HIPK4Q8NE63 616 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 C1orf54Q8WWF1 131 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 SSU72P8A0A1W2PR75 194 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 GAS2O43903 313 aaKnown RBP20.18■□□□□ 0.82
UPF1-201ENST00000262803 HADHAP40939 763 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 EIF2B5Q13144 721 aaKnown RBP20.18■□□□□ 0.82
UPF1-201ENST00000262803 LBRQ14739 615 aaKnown RBP20.18■□□□□ 0.82
UPF1-201ENST00000262803 ZFP69BQ9UJL9 534 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 NPHP3-ACAD11A0A0J9YXS1 232 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 SAMD3Q8N6K7 520 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 AGPAT1Q99943 283 aa20.18■□□□□ 0.82
UPF1-201ENST00000262803 AP1B1Q10567 949 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 TAF1CQ15572 869 aaPredicted RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 ACCSLQ4AC99 568 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 BTBD6Q96KE9 485 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 LBHD1Q9BQE6 289 aaPredicted RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 DHX35Q9H5Z1 703 aaKnown RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 MTMR4Q9NYA4 1195 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 TPI1P60174 286 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 LRRC14Q15048 493 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 STYK1Q6J9G0 422 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 PPM1NQ8N819 430 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 SENP2Q9HC62 589 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 STAT4Q14765 748 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 SGSM1Q2NKQ1 1148 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 SV2CQ496J9 727 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 ZNF280CQ8ND82 737 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 TGS1Q96RS0 853 aaKnown RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 SLC7A5P2Q9GIP4 190 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 EPB41L4AQ9HCS5 686 aaPredicted RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 KCNQ2O43526 872 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 PDIA2Q13087 525 aaKnown RBP20.17■□□□□ 0.82
UPF1-201ENST00000262803 STX19Q8N4C7 294 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 TRIML2Q8N7C3 387 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 APOA4P06727 396 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 TAS2R42Q7RTR8 314 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 SPON2Q9BUD6 331 aa20.17■□□□□ 0.82
UPF1-201ENST00000262803 HAUS5O94927 633 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 CETPP11597 493 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 ZNF543Q08ER8 600 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 ZBED8Q8IZ13 594 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 PIP4K2CQ8TBX8 421 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 DCTN4Q9UJW0 460 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 P4HA2O15460 535 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 PCSK1P29120 753 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 GUCY1A3Q02108 690 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 NFIXQ14938 502 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 IZUMO3Q5VZ72 239 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 CATSPER1Q8NEC5 780 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 FAM129AQ9BZQ8 928 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.16■□□□□ 0.82
UPF1-201ENST00000262803 HIST1H2AGP0C0S8 130 aaPredicted RBP20.16■□□□□ 0.82
UPF1-201ENST00000262803 HIST1H2ADP20671 130 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 SERPINB9P50453 376 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 TRMT10CQ7L0Y3 403 aaKnown RBP20.16■□□□□ 0.82
UPF1-201ENST00000262803 TTC30AQ86WT1 665 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 MS4A14Q96JA4 679 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 HIST1H2AHQ96KK5 128 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 HIST1H2AJQ99878 128 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 H2AFJQ9BTM1 129 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 NDFIP2Q9NV92 336 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 ARHGAP26Q9UNA1 814 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 PIN4Q9Y237 131 aaKnown RBP20.16■□□□□ 0.82
UPF1-201ENST00000262803 C3orf70A6NLC5 250 aaPredicted RBP20.16■□□□□ 0.82
UPF1-201ENST00000262803 POLE2P56282 527 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 OCA2Q04671 838 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 TRIM10Q9UDY6 481 aa20.16■□□□□ 0.82
UPF1-201ENST00000262803 MTSS1O43312 755 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 DNAJC6O75061 913 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 PNPLA4P41247 253 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 SLC16A10Q8TF71 515 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 PI4K2BG5E9Z4 385 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 RAPGEF5Q92565 580 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 CYP26A1O43174 497 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 SPAG6O75602 509 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 POLR1AO95602 1720 aaPredicted RBP20.15■□□□□ 0.82
UPF1-201ENST00000262803 RFX5P48382 616 aaPredicted RBP20.15■□□□□ 0.82
UPF1-201ENST00000262803 RNF149Q8NC42 400 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 FAM151AQ8WW52 585 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 NAF1Q96HR8 494 aaKnown RBP20.15■□□□□ 0.82
UPF1-201ENST00000262803 VIPAS39Q9H9C1 493 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 AAASQ9NRG9 546 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 ZC3H4Q9UPT8 1303 aaKnown RBP20.15■□□□□ 0.82
UPF1-201ENST00000262803 MYMKA6NI61 221 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 GRIK1P39086 918 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 TMEM132DQ14C87 1099 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 NCAPHQ15003 741 aa20.15■□□□□ 0.82
UPF1-201ENST00000262803 ICE2Q659A1 982 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms