RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TCP11X1B4DZS4 312 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 GOLGA8SH3BPF8 625 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 GOLGA8MH3BSY2 632 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 NPM3O75607 178 aaKnown RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 LIG4P49917 911 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 TAS2R40P59535 323 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 SNRNP48Q6IEG0 339 aaKnown RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 HIBCHQ6NVY1 386 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 TTLL6Q8N841 843 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 AAASQ9NRG9 546 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 THAP12O43422 761 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 FSBPO95073 299 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 CLTAP09496 248 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 PIK3CAP42336 1068 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 HMGCS2P54868 508 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 CYP24A1Q07973 514 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 SRRM1Q8IYB3 904 aaKnown RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 POLR3FQ9H1D9 316 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 TMEM8AQ9HCN3 771 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 C1orf112Q9NSG2 853 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 GTF3C4Q9UKN8 822 aa22.75■■□□□ 1.23
TRIM28-201ENST00000253024 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.75■■□□□ 1.23
TRIM28-201ENST00000253024 NR3C2P08235 984 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 FKBP1AP62942 108 aaKnown RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 NBPF12Q5TAG4 269 aaPredicted RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 ACAD10Q6JQN1 1059 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 FAM47EQ6ZV65 393 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 ZBTB33Q86T24 672 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 KIF2BQ8N4N8 673 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 ATXN2LQ8WWM7 1075 aaKnown RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 DDX1Q92499 740 aaKnown RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 MROH7Q68CQ1 1323 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 TMEM120BA0PK00 339 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 EIF3BP55884 814 aaKnown RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 OSTNP61366 133 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 CCDC197Q8NCU1 140 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 BAIAP2L1Q9UHR4 511 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 PCDHB4Q9Y5E5 795 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 DNAH12Q6ZR08 3092 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 GRIN3BO60391 1043 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 SPAG7O75391 227 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 BANF1O75531 89 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 CETPP11597 493 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 DSG3P32926 999 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 NSFP46459 744 aaKnown RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 ORC1Q13415 861 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 NUGGCQ68CJ6 796 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 SCARA5Q6ZMJ2 495 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 SLC38A10Q9HBR0 1119 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 SAE1Q9UBE0 346 aaPredicted RBP22.74■■□□□ 1.23
TRIM28-201ENST00000253024 PCYOX1Q9UHG3 505 aa22.74■■□□□ 1.23
TRIM28-201ENST00000253024 PODXLO00592 558 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 DYNLT1P63172 113 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 EMC10Q5UCC4 262 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 NIM1KQ8IY84 436 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 KIRREL3Q8IZU9 778 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 EIF1ADQ8N9N8 165 aaKnown RBP22.73■■□□□ 1.23
TRIM28-201ENST00000253024 GMLQ99445 158 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 TARS2Q9BW92 718 aaKnown RBP22.73■■□□□ 1.23
TRIM28-201ENST00000253024 TAOK3Q9H2K8 898 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 TBC1D22BQ9NU19 505 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 DIS3Q9Y2L1 958 aaKnown RBP22.73■■□□□ 1.23
TRIM28-201ENST00000253024 NCKAP1LP55160 1127 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 RPL7AP62424 266 aaKnown RBP22.73■■□□□ 1.23
TRIM28-201ENST00000253024 PRKCEQ02156 737 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 MCF2L2Q86YR7 1114 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 KIFAP3Q92845 792 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 ZBTB10Q96DT7 871 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 XPNPEP1Q9NQW7 623 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 PCDHA10Q9Y5I2 948 aa22.73■■□□□ 1.23
TRIM28-201ENST00000253024 COL4A5P29400 1685 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 TTLL13PA6NNM8 815 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 TP73O15350 636 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 IFNB1P01574 187 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 HLA-DRAP01903 254 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 MPP2Q14168 576 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 TAS1R3Q7RTX0 852 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 PSPC1Q8WXF1 523 aaKnown RBP22.72■■□□□ 1.23
TRIM28-201ENST00000253024 RPS6KC1Q96S38 1066 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 MYOZ2Q9NPC6 264 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 CYP1A2P05177 515 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 CLEC16AQ2KHT3 1053 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 MAP4K3Q8IVH8 894 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 SAMD15Q9P1V8 674 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 EXOC7Q9UPT5 735 aa22.72■■□□□ 1.23
TRIM28-201ENST00000253024 ECM2O94769 699 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-201ENST00000253024 NUDT17P0C025 328 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 MMP13P45452 471 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 TDRD10Q5VZ19 366 aaKnown RBP22.71■■□□□ 1.23
TRIM28-201ENST00000253024 C4orf19Q8IY42 314 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 MCOLN2Q8IZK6 566 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 GPD1LQ8N335 351 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 ART4Q93070 314 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 ZNF317Q96PQ6 595 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-201ENST00000253024 TCHPQ9BT92 498 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 MOV10L1Q9BXT6 1211 aaKnown RBP22.71■■□□□ 1.23
TRIM28-201ENST00000253024 ANAPC5Q9UJX4 755 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 TRIM33Q9UPN9 1127 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 POC1B-GALNT4F8VUJ3 575 aa22.71■■□□□ 1.23
TRIM28-201ENST00000253024 GZMAP12544 262 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms