RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 CLSTN3Q9BQT9 956 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 PRKD2Q9BZL6 878 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 C2orf40Q9H1Z8 148 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 FOXP1Q9H334 677 aaPredicted RBP11.39□□□□□ -0.59
VPS50-201ENST00000251739 PPP4R2Q9NY27 417 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 PARP2Q9UGN5 583 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 F5P12259 2224 aa11.39□□□□□ -0.59
VPS50-201ENST00000251739 KRBA1A5PL33 1030 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 TMEM189-UBE2V1I3L0A0 370 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 PRKCBP05771 671 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 LAMP2P13473 410 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 ATP2B1P20020 1258 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 GBP2P32456 591 aaPredicted RBP11.38□□□□□ -0.59
VPS50-201ENST00000251739 GUCY1B3Q02153 619 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 HTR4Q13639 388 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 ECM1Q16610 540 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 PRSS55Q6UWB4 352 aaPredicted RBP11.38□□□□□ -0.59
VPS50-201ENST00000251739 MAEAQ7L5Y9 396 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 ASCL5Q7RTU5 278 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 PALB2Q86YC2 1186 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 SIX5Q8N196 739 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 ANKK1Q8NFD2 765 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 FBXO18Q8NFZ0 1043 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 LNX1Q8TBB1 728 aaPredicted RBP11.38□□□□□ -0.59
VPS50-201ENST00000251739 RSAD2Q8WXG1 361 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 NXPE3Q969Y0 559 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 C8orf76Q96K31 380 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 LLPHQ9BRT6 129 aaKnown RBP11.38□□□□□ -0.59
VPS50-201ENST00000251739 TTPALQ9BTX7 342 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 MFSD1Q9H3U5 465 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 SNTG2Q9NY99 539 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.38□□□□□ -0.59
VPS50-201ENST00000251739 WNT16Q9UBV4 365 aa11.38□□□□□ -0.59
VPS50-201ENST00000251739 DAXXQ9UER7 740 aaPredicted RBP11.38□□□□□ -0.59
VPS50-201ENST00000251739 COL4A3Q01955 1670 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 CASTOR2A6NHX0 329 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 ADAM12O43184 909 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 TADA2AO75478 443 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 NEFLP07196 543 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 POU2F2P09086 479 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 MYBP10242 640 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 SRFP11831 508 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 HOXA9P31269 272 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 TRAPPC10P48553 1259 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 RBM25P49756 843 aaKnown RBP11.37□□□□□ -0.59
VPS50-201ENST00000251739 MMRN1Q13201 1228 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 PRPF4BQ13523 1007 aaKnown RBP11.37□□□□□ -0.59
VPS50-201ENST00000251739 SAFBQ15424 915 aaKnown RBP eCLIP11.37□□□□□ -0.59
VPS50-201ENST00000251739 PSMD5Q16401 504 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 MAPK6Q16659 721 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 TTC38Q5R3I4 469 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 SWT1Q5T5J6 900 aaKnown RBP11.37□□□□□ -0.59
VPS50-201ENST00000251739 NT5DC1Q5TFE4 455 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 ERICH6BQ5W0A0 696 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 HAUS3Q68CZ6 603 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 CD300LGQ6UXG3 332 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 NOSTRINQ8IVI9 506 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 SLC44A3Q8N4M1 653 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 IGSF22Q8N9C0 903 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 FLCNQ8NFG4 579 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 ERMNQ8TAM6 284 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 PPP1R10Q96QC0 940 aaKnown RBP11.37□□□□□ -0.59
VPS50-201ENST00000251739 RTP3Q9BQQ7 232 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 KIFC3Q9BVG8 833 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 LIMCH1Q9UPQ0 1083 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 USP20Q9Y2K6 914 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 COL4A2P08572 1712 aa11.37□□□□□ -0.59
VPS50-201ENST00000251739 ARHGEF35A5YM69 484 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 THP07101 528 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 HNRNPA1P09651 372 aaKnown RBP eCLIP11.36□□□□□ -0.59
VPS50-201ENST00000251739 FGFR3P22607 806 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 IGFBP6P24592 240 aaPredicted RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 EFNA5P52803 228 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 ELAVL2Q12926 359 aaKnown RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 PPP2R5AQ15172 486 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 ZNF174Q15697 407 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 DCAF4L1Q3SXM0 396 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 FAM171A1Q5VUB5 890 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 FRMD5Q7Z6J6 570 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 GLYCTKQ8IVS8 523 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 CCDC83Q8IWF9 413 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 DAW1Q8N136 415 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 DTWD2Q8NBA8 298 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 HASPINQ8TF76 798 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 RNF166Q96A37 237 aaPredicted RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 KCTD12Q96CX2 325 aaKnown RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 KIF2CQ99661 725 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 TMUB1Q9BVT8 246 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 BHMT2Q9H2M3 363 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 SLC2A4RGQ9NR83 387 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 DLGAP2Q9P1A6 1054 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 MTRRQ9UBK8 725 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 FBXL21Q9UKT6 434 aa11.36□□□□□ -0.59
VPS50-201ENST00000251739 ZFP37Q9Y6Q3 630 aaPredicted RBP11.36□□□□□ -0.59
VPS50-201ENST00000251739 DNAH14Q0VDD8 3507 aa11.35□□□□□ -0.59
VPS50-201ENST00000251739 ABLIM1O14639 778 aa11.35□□□□□ -0.59
VPS50-201ENST00000251739 EIF5BO60841 1220 aaKnown RBP11.35□□□□□ -0.59
VPS50-201ENST00000251739 CFHP08603 1231 aa11.35□□□□□ -0.59
VPS50-201ENST00000251739 U2AF2P26368 475 aaKnown RBP eCLIP11.35□□□□□ -0.596e-6■■■■□ 22.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms