RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 FAM171A1Q5VUB5 890 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 LILRA6Q6PI73 481 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 C1orf186Q6ZWK4 172 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 TAS1R3Q7RTX0 852 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 GPR65Q8IYL9 337 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 SMG7Q92540 1137 aaKnown RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 ZNF707Q96C28 371 aaPredicted RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 DRC1Q96MC2 740 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 PNMA5Q96PV4 448 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 PLIN2Q99541 437 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 ACO2Q99798 780 aaKnown RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 TTPALQ9BTX7 342 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 PLEKHA4Q9H4M7 779 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 UPF2Q9HAU5 1272 aaKnown RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 WDR6Q9NNW5 1121 aaKnown RBP15.3■□□□□ 0.04
LINC00339-211ENST00000641009 KMT5AQ9NQR1 393 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 ARHGAP28Q9P2N2 729 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 TNFSF13BQ9Y275 285 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 NOTCH4Q99466 2003 aa15.3■□□□□ 0.04
LINC00339-211ENST00000641009 WDR87Q6ZQQ6 2873 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 VWA3AA6NCI4 1184 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 SFI1A8K8P3 1242 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 AVPR2P30518 371 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 OSTNP61366 133 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 CREMQ03060 361 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 RAD51AP2Q09MP3 1159 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 ZNF568Q3ZCX4 644 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 HDAC7Q8WUI4 952 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 PPP1R10Q96QC0 940 aaKnown RBP15.29■□□□□ 0.04
LINC00339-211ENST00000641009 NT5C3AQ9H0P0 336 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 CDT1Q9H211 546 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 TMEM134Q9H6X4 195 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 GOLGA2P5Q9HBQ8 144 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 ANK1P16157 1881 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 CLUHO75153 1309 aa15.29■□□□□ 0.04
LINC00339-211ENST00000641009 SLC16A4O15374 487 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 CLCNKBP51801 687 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 TCF15Q12870 199 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 PSMD5Q16401 504 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 HYIQ5T013 277 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 CYP26C1Q6V0L0 522 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 APBB1IPQ7Z5R6 666 aaPredicted RBP15.28■□□□□ 0.04
LINC00339-211ENST00000641009 LNX1Q8TBB1 728 aaPredicted RBP15.28■□□□□ 0.04
LINC00339-211ENST00000641009 PIK3R5Q8WYR1 880 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 PHOX2BQ99453 314 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 CLSTN3Q9BQT9 956 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 TARS2Q9BW92 718 aaKnown RBP15.28■□□□□ 0.04
LINC00339-211ENST00000641009 MRPL4Q9BYD3 311 aaKnown RBP15.28■□□□□ 0.04
LINC00339-211ENST00000641009 RHOBTB2Q9BYZ6 727 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 KCNK12Q9HB15 430 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 PIDD1Q9HB75 910 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 PTPRHQ9HD43 1115 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 SMC3Q9UQE7 1217 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 CFAP54Q96N23 3096 aa15.28■□□□□ 0.04
LINC00339-211ENST00000641009 ADAM12O43184 909 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 B3GAT3O94766 335 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 C1RP00736 705 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 GUCY2CP25092 1073 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 GBP2P32456 591 aaPredicted RBP15.27■□□□□ 0.04
LINC00339-211ENST00000641009 GRM5P41594 1212 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 MRE11P49959 708 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 PTPN5P54829 565 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 TBC1D32Q96NH3 1257 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 MYADMQ96S97 322 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 CCDC94Q9BW85 323 aaPredicted RBP15.27■□□□□ 0.04
LINC00339-211ENST00000641009 C17orf75Q9HAS0 396 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 ZDHHC7Q9NXF8 308 aa15.27■□□□□ 0.04
LINC00339-211ENST00000641009 SMIM28A0A1B0GU29 152 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 PAPLNO95428 1278 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 PROZP22891 400 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 MCM2P49736 904 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 SLC12A3P55017 1021 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 SOX4Q06945 474 aaPredicted RBP15.27■□□□□ 0.03
LINC00339-211ENST00000641009 ELAVL2Q12926 359 aaKnown RBP15.27■□□□□ 0.03
LINC00339-211ENST00000641009 TDGQ13569 410 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 UPP1Q16831 310 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 CD300LGQ6UXG3 332 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 SYT2Q8N9I0 419 aaPredicted RBP15.27■□□□□ 0.03
LINC00339-211ENST00000641009 C3orf58Q8NDZ4 430 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 RSAD2Q8WXG1 361 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 STAMQ92783 540 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 CDK5RAP3Q96JB5 506 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 ZBTB45Q96K62 511 aaPredicted RBP15.27■□□□□ 0.03
LINC00339-211ENST00000641009 PRRX2Q99811 253 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 TIPINQ9BVW5 301 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 PRKD2Q9BZL6 878 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 FBXW11Q9UKB1 542 aa15.27■□□□□ 0.03
LINC00339-211ENST00000641009 RBM19Q9Y4C8 960 aaKnown RBP15.27■□□□□ 0.03
LINC00339-211ENST00000641009 NPHP3-ACAD11A0A0J9YXS1 232 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 TMEM189-UBE2V1I3L0A0 370 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 I3L4J1 428 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ABLIM1O14639 778 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ZMYND10O75800 440 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 PLA2G4BP0C869 781 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 HARSP12081 509 aaKnown RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 FGFR3P22607 806 aa15.26■□□□□ 0.03
LINC00339-211ENST00000641009 YARSP54577 528 aaKnown RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 CACNB1Q02641 598 aaPredicted RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 LARP1BQ659C4 914 aaKnown RBP15.26■□□□□ 0.03
LINC00339-211ENST00000641009 ARL6IP4Q66PJ3 421 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms