RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 PIGOQ8TEQ8 1089 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CINPQ9BW66 212 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 STK33Q9BYT3 514 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 GPN3Q9UHW5 284 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 P4HA2O15460 535 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PCDH8O95206 1070 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CAMK2GQ13555 558 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 EFTUD2Q15029 972 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 GSTA3Q16772 222 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TEDDM1Q5T9Z0 273 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 TMC7Q7Z402 723 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 C11orf96Q7Z7L8 435 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PLEKHA8Q96JA3 519 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 HMX1Q9NP08 348 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 MAD2L2Q9UI95 211 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 APPL1Q9UKG1 709 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 CAPN11Q9UMQ6 739 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 PPP2R3BQ9Y5P8 575 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 COPG1Q9Y678 874 aaKnown RBP6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ADGRL3Q9HAR2 1447 aa6.47□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 GFAPP14136 432 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 PFKFB1P16118 471 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ABCE1P61221 599 aaKnown RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ROR1Q01973 937 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 EHHADHQ08426 723 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF177Q13360 481 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 FAM102AQ5T9C2 384 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ATP6V0D2Q8N8Y2 350 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 MPP6Q9NZW5 540 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 KIAA1468Q9P260 1216 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 RPS6KB2Q9UBS0 482 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 FHOD1Q9Y613 1164 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 QRICH2Q9H0J4 1663 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 MYH10P35580 1976 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ARHGEF5Q12774 1597 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 IFRD1O00458 451 aaPredicted RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 PFKFB2O60825 505 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CYP2C9P11712 490 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 MAPK9P45984 424 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CCT5P48643 541 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 HDAC4P56524 1084 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 PAN2Q504Q3 1202 aaKnown RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ZNF394Q53GI3 561 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 GPD1LQ8N335 351 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CRAMP1Q96RY5 1269 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 FANCEQ9HB96 536 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 PALMDQ9NP74 551 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 AGO2Q9UKV8 859 aaKnown RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CEP152O94986 1710 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CDC42BPBQ9Y5S2 1711 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 MEI4A8MW99 385 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CKMP06732 381 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 SCP2P22307 547 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 YWHABP31946 246 aaKnown RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 RPL10AP62906 217 aaKnown RBP6.46□□□□□ -1.37
SCN1A-217ENST00000637988 LRRC74AQ0VAA2 488 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CYP4F22Q6NT55 531 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 SCYL3Q8IZE3 742 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 TNIP2Q8NFZ5 429 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 SPIRE2Q8WWL2 714 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 DYNLL2Q96FJ2 89 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 DACH2Q96NX9 599 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 ING2Q9H160 280 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 CARD9Q9H257 536 aa6.46□□□□□ -1.37
SCN1A-217ENST00000637988 MYMKA6NI61 221 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PGRMC1O00264 195 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PRPF3O43395 683 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 DCTN3O75935 186 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PRKCBP05771 671 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 CPA1P15085 419 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 SESN3P58005 492 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 DDIASQ8IXT1 998 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 IGSF9BQ9UPX0 1349 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 HMBSP08397 361 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 KCNA2P16389 499 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 RFC5P40937 340 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 RWDD2BP57060 319 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 VPS37AQ8NEZ2 397 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 ATL2Q8NHH9 583 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 MAML1Q92585 1016 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 FAR2Q96K12 515 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 SPATA31A3Q5VYP0 1347 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PNMA6EA0A0J9YXQ4 647 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 HNRNPRO43390 633 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 ZC3H11AO75152 810 aaKnown RBP eCLIP6.46□□□□□ -1.382e-6■□□□□ 9.4
SCN1A-217ENST00000637988 CTSEP14091 401 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF24P17028 368 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 TTLL9Q3SXZ7 439 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 BHMT2Q9H2M3 363 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 DHX35Q9H5Z1 703 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PARVAQ9NVD7 372 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 BFARQ9NZS9 450 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 PREX2Q70Z35 1606 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 C3orf70A6NLC5 250 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 GAS2O43903 313 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 RHOBTB3O94955 611 aa6.46□□□□□ -1.38
SCN1A-217ENST00000637988 LUC7L3O95232 432 aaKnown RBP6.46□□□□□ -1.38
SCN1A-217ENST00000637988 CMA1P23946 247 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms