RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 BMT2Q1RMZ1 405 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 FAM26FQ5R3K3 315 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 CLEC17AQ6ZS10 378 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 POF1BQ8WVV4 589 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 PAGE5Q96GU1 130 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 SNX27Q96L92 541 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 TIGD1Q96MW7 591 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 GTPBP4Q9BZE4 634 aaKnown RBP19.96■□□□□ 0.79
CLN3-259ENST00000637551 ANKFY1Q9P2R3 1169 aa19.96■□□□□ 0.79
CLN3-259ENST00000637551 RBAK-RBAKDNI3L0D1 243 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 RFXAPO00287 272 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 PTGESO14684 152 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 C1RP00736 705 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 GARTP22102 1010 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 FAM160A1Q05DH4 1040 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 CAMK1Q14012 370 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 NAB2Q15742 525 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 KRBA2Q6ZNG9 492 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 EPM2AIP1Q7L775 607 aaPredicted RBP19.95■□□□□ 0.78
CLN3-259ENST00000637551 TMEM174Q8WUU8 243 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 CCDC47Q96A33 483 aaKnown RBP19.95■□□□□ 0.78
CLN3-259ENST00000637551 PPP1R10Q96QC0 940 aaKnown RBP19.95■□□□□ 0.78
CLN3-259ENST00000637551 EPHX3Q9H6B9 360 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 SERTAD1Q9UHV2 236 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 SSX2IPQ9Y2D8 614 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 FAN1Q9Y2M0 1017 aa19.95■□□□□ 0.78
CLN3-259ENST00000637551 DDHD2O94830 711 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 ZNF202O95125 648 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 EFEMP2O95967 443 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 LDHAP00338 332 aaKnown RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 POMCP01189 267 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 PAX3P23760 479 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 SLC11A1P49279 550 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 ELAVL2Q12926 359 aaKnown RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 LONRF3Q496Y0 759 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 ZNF280BQ86YH2 543 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 RNF168Q8IYW5 571 aaPredicted RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 FMR1NBQ8N0W7 255 aaPredicted RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 ZNF507Q8TCN5 953 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 DDX27Q96GQ7 796 aaKnown RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 COLEC11Q9BWP8 271 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 APOL6Q9BWW8 343 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 ALG13Q9NP73 1137 aaKnown RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 HCSTQ9UBK5 93 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 HOOK1Q9UJC3 728 aaKnown RBP19.94■□□□□ 0.78
CLN3-259ENST00000637551 DERAQ9Y315 318 aa19.94■□□□□ 0.78
CLN3-259ENST00000637551 TTC26A0AVF1 554 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 XPOTO43592 962 aaKnown RBP19.93■□□□□ 0.78
CLN3-259ENST00000637551 KIF20AO95235 890 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 CYP3A5P20815 502 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 AFF1P51825 1210 aaKnown RBP19.93■□□□□ 0.78
CLN3-259ENST00000637551 TFF2Q03403 129 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 KCNB1Q14721 858 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 AAK1Q2M2I8 961 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 ZC2HC1CQ53FD0 456 aaPredicted RBP19.93■□□□□ 0.78
CLN3-259ENST00000637551 SLC39A4Q6P5W5 647 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 NT5DC4Q86YG4 428 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 GOLGA5Q8TBA6 731 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 CHAMP1Q96JM3 812 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 MSTO1Q9BUK6 570 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 ASB7Q9H672 318 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 GDPD2Q9HCC8 539 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 DNAJB4Q9UDY4 337 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 GDAQ9Y2T3 454 aa19.93■□□□□ 0.78
CLN3-259ENST00000637551 MUC6Q6W4X9 2439 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 SMIM28A0A1B0GU29 152 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 NRP1O14786 923 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 CTSAP10619 480 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 RPL9P32969 192 aaKnown RBP19.92■□□□□ 0.78
CLN3-259ENST00000637551 CUL4BQ13620 913 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 SMC1AQ14683 1233 aaKnown RBP19.92■□□□□ 0.78
CLN3-259ENST00000637551 CEP120Q8N960 986 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 ENGASEQ8NFI3 743 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 STAMQ92783 540 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 ZBTB45Q96K62 511 aaPredicted RBP19.92■□□□□ 0.78
CLN3-259ENST00000637551 GBP3Q9H0R5 595 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 ZBP1Q9H171 429 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 GOLPH3LQ9H4A5 285 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 EXOC1Q9NV70 894 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 MIOSQ9NXC5 875 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 CPSF3Q9UKF6 684 aaKnown RBP19.92■□□□□ 0.78
CLN3-259ENST00000637551 AGO2Q9UKV8 859 aaKnown RBP19.92■□□□□ 0.78
CLN3-259ENST00000637551 USP20Q9Y2K6 914 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 ANK1P16157 1881 aa19.92■□□□□ 0.78
CLN3-259ENST00000637551 KLRC4O43908 158 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 B4GALT3O60512 393 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 RHOBTB3O94955 611 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 SOD2P04179 222 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 DNAJB1P25685 340 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 MATR3P43243 847 aaKnown RBP eCLIP19.91■□□□□ 0.78
CLN3-259ENST00000637551 AFMP43652 599 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 KCNQ1P51787 676 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 CASP5P51878 434 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 CREMQ03060 361 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 PPP2R3AQ06190 1150 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 SLC10A6Q3KNW5 377 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 ZBTB33Q86T24 672 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 C12orf56Q8IXR9 622 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 SYCP3Q8IZU3 236 aa19.91■□□□□ 0.78
CLN3-259ENST00000637551 PABPC5Q96DU9 382 aaKnown RBP19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms