RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 BECN1Q14457 450 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 PCBP1Q15365 356 aaKnown RBP eCLIP3.33□□□□□ -1.88
VIM-210ENST00000637053 PPP1R7Q15435 360 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ZSCAN26Q16670 478 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 FNDC3BQ53EP0 1204 aaKnown RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 TTC39AQ5SRH9 613 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 KAZNQ674X7 775 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 PKN3Q6P5Z2 889 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ALKBH5Q6P6C2 394 aaKnown RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 POMZP3Q6PJE2 187 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 PDZD4Q76G19 769 aaPredicted RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 NUP54Q7Z3B4 507 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 TRIM74Q86UV6 250 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 TRIM73Q86UV7 250 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 AHI1Q8N157 1196 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ZBTB38Q8NAP3 1195 aaPredicted RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 IL17RDQ8NFM7 739 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 CCDC148Q8NFR7 591 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 OR52K2Q8NGK3 314 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 FBXO30Q8TB52 745 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 CTNNBL1Q8WYA6 563 aaPredicted RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.33□□□□□ -1.88
VIM-210ENST00000637053 RABGGTAQ92696 567 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 NKD1Q969G9 470 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 FUBP3Q96I24 572 aaKnown RBP eCLIP3.33□□□□□ -1.88
VIM-210ENST00000637053 RBM15Q96T37 977 aaKnown RBP eCLIP3.33□□□□□ -1.882e-11■■□□□ 14.4
VIM-210ENST00000637053 NTPCRQ9BSD7 190 aaKnown RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 FSD1Q9BTV5 496 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 TXLNGYQ9BZA5 131 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 C2orf40Q9H1Z8 148 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 CCDC68Q9H2F9 335 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 VPS37BQ9H9H4 285 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ARFGAP3Q9NP61 516 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 GGA3Q9NZ52 723 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 TBC1D7Q9P0N9 293 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ZHX1Q9UKY1 873 aaPredicted RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 MRPL11Q9Y3B7 192 aaKnown RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 SUPT16HQ9Y5B9 1047 aaKnown RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 V9GYY5 206 aaPredicted RBP3.33□□□□□ -1.88
VIM-210ENST00000637053 AKNAQ7Z591 1439 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ABCC9O60706 1549 aa3.33□□□□□ -1.88
VIM-210ENST00000637053 ARPC4-TTLL3A0A0A6YYG9 625 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TBKBP1A7MCY6 615 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 PI4K2BG5E9Z4 385 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 H0YHG0 523 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 FZD9O00144 591 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 POLR3GO15318 223 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 SLC7A4O43246 635 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 BUB1BO60566 1050 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 PQBP1O60828 265 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 ZBED4O75132 1171 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 USP1O94782 785 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 PRKD3O94806 890 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 NPTXRO95502 500 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 MT-CO1P00395 513 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ITGB3P05106 788 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CYP1A2P05177 515 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 HSPA1AP0DMV8 641 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 HSPA1BP0DMV9 641 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 C6P13671 934 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CAPN2P17655 700 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 HDCP19113 662 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TFEBP19484 476 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TGM1P22735 817 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ATP5F1P24539 256 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 IGFBP6P24592 240 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 ATP5DP30049 168 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 L1CAMP32004 1257 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 USP8P40818 1118 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 IARSP41252 1262 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 RECQLP46063 649 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 LIMS1P48059 325 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CENPAP49450 140 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 NLRP5P59047 1200 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 ERVFRD-1P60508 538 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GPR85P60893 370 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CTAG1AP78358 180 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 BTKQ06187 659 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GRB10Q13322 594 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 SMAD4Q13485 552 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 LAPTM5Q13571 262 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CNGA3Q16281 694 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TAF12Q16514 161 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CCDC38Q502W7 563 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CCDC178Q5BJE1 867 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CRB2Q5IJ48 1285 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 FKBP15Q5T1M5 1219 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 NT5DC1Q5TFE4 455 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 FOXB2Q5VYV0 432 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GPR139Q6DWJ6 353 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 MRM1Q6IN84 353 aaKnown RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 RAB12Q6IQ22 244 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 B3GNT9Q6UX72 402 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 C6orf15Q6UXA7 325 aaPredicted RBP3.32□□□□□ -1.88
VIM-210ENST00000637053 GBP6Q6ZN66 633 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CCDC80Q76M96 950 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 CCDC91Q7Z6B0 441 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 GALNT7Q86SF2 657 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 NLRP10Q86W26 655 aa3.32□□□□□ -1.88
VIM-210ENST00000637053 TMTC1Q8IUR5 882 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms