RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZNF334Q9HCZ1 680 aaPredicted RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 RBM12Q9NTZ6 932 aaKnown RBP16.23■□□□□ 0.19
CLN3-249ENST00000636685 KLK14Q9P0G3 267 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 WASF3Q9UPY6 502 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 GIT1Q9Y2X7 761 aa16.23■□□□□ 0.19
CLN3-249ENST00000636685 FLNBO75369 2602 aaKnown RBP16.22■□□□□ 0.19
CLN3-249ENST00000636685 SGSM2O43147 1006 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 TSPAN1O60635 241 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 ERLIN2O94905 339 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 CCNE1P24864 410 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 GDI1P31150 447 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 PTGDRQ13258 359 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 UVSSAQ2YD98 709 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 FAM78AQ5JUQ0 283 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 Q6ZS52 159 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 MAP4K3Q8IVH8 894 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 RDM1Q8NG50 284 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 PSPC1Q8WXF1 523 aaKnown RBP16.22■□□□□ 0.19
CLN3-249ENST00000636685 IRF7Q92985 503 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 CCDC136Q96JN2 1154 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 ADAM33Q9BZ11 813 aa16.22■□□□□ 0.19
CLN3-249ENST00000636685 BMP2KQ9NSY1 1161 aaPredicted RBP16.22■□□□□ 0.19
CLN3-249ENST00000636685 DMXL2Q8TDJ6 3036 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 TMEM8BA6NDV4 472 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 PSMD10O75832 226 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 EPN2O95208 641 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 PAPSS2O95340 614 aaPredicted RBP16.21■□□□□ 0.19
CLN3-249ENST00000636685 IGHDP01880 384 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 OR1D2P34982 312 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 NOVA1P51513 510 aaKnown RBP16.21■□□□□ 0.19
CLN3-249ENST00000636685 GRIK3Q13003 919 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 RAB33AQ14088 237 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 NOTUMQ6P988 496 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 RNF149Q8NC42 400 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 TCEAL4Q96EI5 215 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 ZMYND12Q9H0C1 365 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 CSRNP2Q9H175 543 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 RWDD1Q9H446 243 aaPredicted RBP16.21■□□□□ 0.19
CLN3-249ENST00000636685 ZFP14Q9HCL3 533 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 C6orf50Q9HD87 102 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 BRPF3Q9ULD4 1205 aa16.21■□□□□ 0.19
CLN3-249ENST00000636685 EML5Q05BV3 1969 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 ESYT2A0FGR8 921 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 CASTOR2A6NHX0 329 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 KIF4AO95239 1232 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 ZNF252P-AS1Q0IIN9 211 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 PFKFB3Q16875 520 aaPredicted RBP16.2■□□□□ 0.18
CLN3-249ENST00000636685 WDR44Q5JSH3 913 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 TTC22Q5TAA0 569 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 RNF43Q68DV7 783 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 B3GNT9Q6UX72 402 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 VITQ6UXI7 678 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 WDR5BQ86VZ2 330 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 SLC7A3Q8WY07 619 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 ZCCHC14Q8WYQ9 949 aaKnown RBP16.2■□□□□ 0.18
CLN3-249ENST00000636685 GATA6Q92908 595 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 CCDC51Q96ER9 411 aa16.2■□□□□ 0.18
CLN3-249ENST00000636685 TRIM6Q9C030 488 aaPredicted RBP16.2■□□□□ 0.18
CLN3-249ENST00000636685 SMG1Q96Q15 3661 aaKnown RBP16.19■□□□□ 0.18
CLN3-249ENST00000636685 ATG2BQ96BY7 2078 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 ZBTB43O43298 467 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 CDC27P30260 824 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 AXLP30530 894 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 PRSS36Q5K4E3 855 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 PLA2G2CQ5R387 149 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 TCEAL6Q6IPX3 200 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 KBTBD6Q86V97 674 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 CDR2LQ86X02 465 aaPredicted RBP16.19■□□□□ 0.18
CLN3-249ENST00000636685 TCEAL3Q969E4 200 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 LOXL4Q96JB6 756 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 ASB16Q96NS5 453 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 DHX33Q9H6R0 707 aaKnown RBP16.19■□□□□ 0.18
CLN3-249ENST00000636685 TRPV5Q9NQA5 729 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 AVENQ9NQS1 362 aaPredicted RBP16.19■□□□□ 0.18
CLN3-249ENST00000636685 PARP2Q9UGN5 583 aa16.19■□□□□ 0.18
CLN3-249ENST00000636685 ARID2Q68CP9 1835 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 GOLGA8AA7E2F4 631 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 GOLGA8BA8MQT2 603 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 TAF4O00268 1085 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 SLC27A2O14975 620 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 ZIC2O95409 532 aaPredicted RBP16.18■□□□□ 0.18
CLN3-249ENST00000636685 PTPN2P17706 415 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 PSMC3P17980 439 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 VIPR2P41587 438 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 RAP1GAPP47736 663 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 PSMC5P62195 406 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 LRRC32Q14392 662 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 FERMT3Q86UX7 667 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 HACE1Q8IYU2 909 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 CEP170P1Q96L14 293 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 ZSWIM3Q96MP5 696 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 CORO1BQ9BR76 489 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 NCANO14594 1321 aa16.18■□□□□ 0.18
CLN3-249ENST00000636685 WDR27A2RRH5 827 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 ZNF263O14978 683 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 NPTXRO95502 500 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 CCR2P41597 374 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 SOX9P48436 509 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 PXNP49023 591 aaPredicted RBP16.17■□□□□ 0.18
CLN3-249ENST00000636685 TUSC3Q13454 348 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms