RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 TRIM2Q9C040 744 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 AURKCQ9UQB9 309 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 PDZK1P1A8MUH7 402 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 STX7O15400 261 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NOS3P29474 1203 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 GALNT3Q14435 633 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 LPIN1Q14693 890 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ARID5BQ14865 1188 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 C2CD6Q53TS8 623 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SPATA2LQ8IUW3 424 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SCN4BQ8IWT1 228 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 NELFCDQ8IXH7 590 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 BEST2Q8NFU1 509 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 WDR36Q8NI36 951 aaKnown RBP6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF577Q9BSK1 485 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 OSBPL1AQ9BXW6 950 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 SERPINB13Q9UIV8 391 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 GMEB1Q9Y692 573 aa6.32□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF839A8K0R7 811 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FOXP2O15409 715 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MTSS1O43312 755 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 STX11O75558 287 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PGK2P07205 417 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PRR29P0C7W0 189 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ALOX15P16050 662 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MSH3P20585 1137 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 STAT5AP42229 794 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MAGEA10P43363 369 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 STAT5BP51692 787 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 TAF13Q15543 124 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 UGP2Q16851 508 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 NAA35Q5VZE5 725 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 EPM2AIP1Q7L775 607 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 P3H2Q8IVL5 708 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PEX5LQ8IYB4 626 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FAM81AQ8TBF8 368 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 REXO5Q96IC2 774 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 SLF1Q9BQI6 1058 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 HAUS4Q9H6D7 363 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RGS18Q9NS28 235 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF112Q9UJU3 913 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 TMEM5Q9Y2B1 443 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 V9GY48 417 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF638Q14966 1978 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MYO1GB0I1T2 1018 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 EXTL3O43909 919 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 HOXC8P31273 242 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ALDH18A1P54886 795 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 EFHC2Q5JST6 749 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CCSAPQ6IQ19 270 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 LRRC70Q7Z2Q7 622 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZBTB38Q8NAP3 1195 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CNKSR1Q969H4 720 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RBBP8Q99708 897 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 LATS2Q9NRM7 1088 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FPGT-TNNI3KV9GXZ4 949 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 LMTK3Q96Q04 1460 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MGRN1O60291 552 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 H2AFYO75367 372 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ATN1P54259 1190 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 KCNQ4P56696 695 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CDC42EP1Q00587 391 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 HEATR6Q6AI08 1181 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 NEK5Q6P3R8 708 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 IZUMO1Q8IYV9 350 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 SLC20A1Q8WUM9 679 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 THRSPQ92748 146 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CMTM5Q96DZ9 223 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ELAC2Q9BQ52 826 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZMYND12Q9H0C1 365 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RNF123Q5XPI4 1314 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 SH3TC1Q8TE82 1336 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PFKFB2O60825 505 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FKBP9O95302 570 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MYBL2P10244 700 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FEN1P39748 380 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RXRGP48443 463 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 IFNAR2P48551 515 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PRIM2P49643 509 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RGS8P57771 180 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 GNA13Q14344 377 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 SMCO1Q147U7 214 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ARMC4Q5T2S8 1044 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CDC73Q6P1J9 531 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 PACS1Q6VY07 963 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 RGS9BPQ6ZS82 235 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 FKBP9P1Q75LS8 142 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 LRRC8DQ7L1W4 858 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 MIGA2Q7L4E1 593 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CALML6Q8TD86 181 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 CAAP1Q9H8G2 361 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF532Q9HCE3 1301 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 UBA6A0AVT1 1052 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ABCB1P08183 1280 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 GCFC2P16383 781 aaKnown RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 NFKB1P19838 968 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 TBXAS1P24557 533 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-212ENST00000636194 COPB2P35606 906 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 ZNF618Q5T7W0 954 aa6.31□□□□□ -1.4
SCN1A-212ENST00000636194 USPL1Q5W0Q7 1092 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms