RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 SPAG17Q6Q759 2223 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 SF3B1O75533 1304 aaKnown RBP eCLIP15.52■□□□□ 0.084e-7■■■■■ 86.2
SNX1-214ENST00000625244 MSH4O15457 936 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 CIITAP33076 1130 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 LIFRP42702 1097 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 RBM25P49756 843 aaKnown RBP15.52■□□□□ 0.08
SNX1-214ENST00000625244 JAK3P52333 1124 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 FUT2Q10981 343 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 FAM171A1Q5VUB5 890 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 VITQ6UXI7 678 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 CACNA2D4Q7Z3S7 1137 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 TMEM87BQ96K49 555 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 GIT1Q9Y2X7 761 aa15.52■□□□□ 0.08
SNX1-214ENST00000625244 NAV2Q8IVL1 2488 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 C4orf47A7E2U8 309 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 DDX11L8A8MPP1 907 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 KALRNO60229 2985 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 GAS7O60861 476 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 AKAP5P24588 427 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 HOXA6P31267 233 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 SFNP31947 248 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 MCM5P33992 734 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 MPLP40238 635 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 RAB33AQ14088 237 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 HSP90AA2PQ14568 343 aaPredicted RBP15.51■□□□□ 0.07
SNX1-214ENST00000625244 SH3PXD2AQ5TCZ1 1133 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 PLA2G4FQ68DD2 849 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 ANO5Q75V66 913 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 GAB3Q8WWW8 586 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 PRPF31Q8WWY3 499 aaKnown RBP15.51■□□□□ 0.07
SNX1-214ENST00000625244 TCEAL4Q96EI5 215 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 CPB2Q96IY4 423 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 LRRC2Q9BYS8 371 aa15.51■□□□□ 0.07
SNX1-214ENST00000625244 AVENQ9NQS1 362 aaPredicted RBP15.51■□□□□ 0.07
SNX1-214ENST00000625244 ARNTLO00327 626 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 EDIL3O43854 480 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 RPP40O75818 363 aaKnown RBP15.5■□□□□ 0.07
SNX1-214ENST00000625244 PSMC3P17980 439 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 OR1D2P34982 312 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 LRRC32Q14392 662 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 PRSS36Q5K4E3 855 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 CHD1LQ86WJ1 897 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 EXOC6Q8TAG9 804 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 TMEM143Q96AN5 459 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 KIF12Q96FN5 646 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 ZSWIM3Q96MP5 696 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 ASB16Q96NS5 453 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 RIT2Q99578 217 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 EDEM2Q9BV94 578 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 NXF3Q9H4D5 531 aaKnown RBP15.5■□□□□ 0.07
SNX1-214ENST00000625244 VPS45Q9NRW7 570 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 KLK14Q9P0G3 267 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 PCDHGA5Q9Y5G8 931 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 TDRD15B5MCY1 1934 aaKnown RBP15.5■□□□□ 0.07
SNX1-214ENST00000625244 TICRRQ7Z2Z1 1910 aa15.5■□□□□ 0.07
SNX1-214ENST00000625244 NCANO14594 1321 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 hCG_1984214I3L0E3 225 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 TSPAN1O60635 241 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 KIF4AO95239 1232 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 VIPR2P41587 438 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 SOX9P48436 509 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 PXNP49023 591 aaPredicted RBP15.49■□□□□ 0.07
SNX1-214ENST00000625244 LAMTOR4Q0VGL1 99 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 GRIK3Q13003 919 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 LRCH2Q5VUJ6 765 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 MIER3Q7Z3K6 550 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 ZNF713Q8N859 430 aaPredicted RBP15.49■□□□□ 0.07
SNX1-214ENST00000625244 ZNF579Q8NAF0 562 aaKnown RBP15.49■□□□□ 0.07
SNX1-214ENST00000625244 SLC5A5Q92911 643 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 JPH2Q9BR39 696 aaPredicted RBP15.49■□□□□ 0.07
SNX1-214ENST00000625244 TEKT3Q9BXF9 490 aa15.49■□□□□ 0.07
SNX1-214ENST00000625244 WDR27A2RRH5 827 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 CASTOR2A6NHX0 329 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 ERLIN2O94905 339 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 PTPN2P17706 415 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 CCR2P41597 374 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 NPEPPSP55786 919 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 KIAA1211LQ6NV74 962 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 NOTUMQ6P988 496 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 TXNDC11Q6PKC3 985 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 RTL10Q7L3V2 364 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 RNF149Q8NC42 400 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 PSPC1Q8WXF1 523 aaKnown RBP15.48■□□□□ 0.07
SNX1-214ENST00000625244 CSRNP2Q9H175 543 aa15.48■□□□□ 0.07
SNX1-214ENST00000625244 ZNF263O14978 683 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 EXTL3O43909 919 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 PSMD10O75832 226 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 CEACAM1P13688 526 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 MLLT6P55198 1093 aaPredicted RBP15.47■□□□□ 0.07
SNX1-214ENST00000625244 C19orf48Q6RUI8 117 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 SGMS1Q86VZ5 419 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 SMC5Q8IY18 1101 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 REXO1Q8N1G1 1221 aaKnown RBP15.47■□□□□ 0.07
SNX1-214ENST00000625244 RDM1Q8NG50 284 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 SMARCD2Q92925 531 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 CCDC51Q96ER9 411 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 CORO1BQ9BR76 489 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 RBM28Q9NW13 759 aaKnown RBP15.47■□□□□ 0.07
SNX1-214ENST00000625244 CDY1Q9Y6F8 540 aa15.47■□□□□ 0.07
SNX1-214ENST00000625244 SLC38A8A6NNN8 435 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms