RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 ACBD3Q9H3P7 528 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 NPTXRO95502 500 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 TCP1P17987 556 aaKnown RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 BMS1Q14692 1282 aaKnown RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 CST9Q5W186 159 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 IQSEC1Q6DN90 963 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 GSPT2Q8IYD1 628 aaKnown RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 SYCE1Q8N0S2 351 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 CPA5Q8WXQ8 436 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 HEXIM2Q96MH2 286 aaKnown RBP16.88■□□□□ 0.29
CPSF1-213ENST00000620219 PTPN18Q99952 460 aa16.88■□□□□ 0.29
CPSF1-213ENST00000620219 FOCADQ5VW36 1801 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 F8VZ95 297 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 ELNP15502 786 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 ATP4AP20648 1035 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 GNA15P30679 374 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 SMC1BQ8NDV3 1235 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 DHX33Q9H6R0 707 aaKnown RBP16.87■□□□□ 0.29
CPSF1-213ENST00000620219 PDE4DIPQ5VU43 2346 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 ZSCAN20P17040 1043 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-213ENST00000620219 PHLDB3Q6NSJ2 640 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 COG1Q8WTW3 980 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 NUB1Q9Y5A7 615 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 SURF1Q15526 300 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 DEFB115Q30KQ5 88 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 EEF1DP3Q658K8 133 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 ZNF771Q7L3S4 317 aaPredicted RBP16.87■□□□□ 0.29
CPSF1-213ENST00000620219 NAGPAQ9UK23 515 aa16.87■□□□□ 0.29
CPSF1-213ENST00000620219 DESP17661 470 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 SEL1L2Q5TEA6 688 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 UBL4BQ8N7F7 174 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 MS4A4AQ96JQ5 239 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 CNOT8Q9UFF9 292 aaKnown RBP16.86■□□□□ 0.29
CPSF1-213ENST00000620219 TMEM88BA6NKF7 163 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 MYO1FO00160 1098 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 PIK3R2O00459 728 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 LONRF2Q1L5Z9 754 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 DUSP28Q4G0W2 176 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 SLC47A2Q86VL8 602 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 RABGGTAQ92696 567 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 KCND1Q9NSA2 647 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 HES2Q9Y543 173 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 GAS2O43903 313 aaKnown RBP16.86■□□□□ 0.29
CPSF1-213ENST00000620219 ADSSP30520 456 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 MPZL3Q6UWV2 235 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 PLPPR4Q7Z2D5 763 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 TTC16Q8NEE8 873 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 OR6B3Q8NGW1 331 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 PLVAPQ9BX97 442 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 AJAP1Q9UKB5 411 aaPredicted RBP16.86■□□□□ 0.29
CPSF1-213ENST00000620219 SSC5DA1L4H1 1573 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 AOC2O75106 756 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 ITGB3P05106 788 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 GUCY2FP51841 1108 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 AP1M1Q9BXS5 423 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 TSKSQ9UJT2 592 aa16.86■□□□□ 0.29
CPSF1-213ENST00000620219 INHBEP58166 350 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 MYL6P60660 151 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 YWHAEP62258 255 aaKnown RBP16.85■□□□□ 0.29
CPSF1-213ENST00000620219 SNRPFP62306 86 aaKnown RBP16.85■□□□□ 0.29
CPSF1-213ENST00000620219 ZNF211Q13398 564 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-213ENST00000620219 FSCN1Q16658 493 aaKnown RBP16.85■□□□□ 0.29
CPSF1-213ENST00000620219 MAP9Q49MG5 647 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 SAPCD2Q86UD0 394 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 PCYT2Q99447 389 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 DNAI2Q9GZS0 605 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 ADAM22Q9P0K1 906 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 STAG3L1P0CL83 205 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 KIAA0319LQ8IZA0 1049 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 ANKRD7Q92527 254 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 RRN3P2A6NIE6 340 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 KRIT1O00522 736 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 CA8P35219 290 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 MFSD10Q14728 455 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 B3GNT9Q6UX72 402 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 IFNL1Q8IU54 200 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 KRT222Q8N1A0 295 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 GANQ9H2C0 597 aa16.85■□□□□ 0.29
CPSF1-213ENST00000620219 MYH10P35580 1976 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 HOXD10P28358 340 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 RASAL3Q86YV0 1011 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 HACE1Q8IYU2 909 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 C17orf102A2RUQ5 167 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 MMEP08473 750 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 IFRD2Q12894 506 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-213ENST00000620219 MSANTD4Q8NCY6 345 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 OR5B17Q8NGF7 314 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 ANAPC7Q9UJX3 599 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 SNX9Q9Y5X1 595 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 RBAK-RBAKDNI3L0D1 243 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 ACKR2O00590 384 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 MYO1EQ12965 1108 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 TUBB2AQ13885 445 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 TRAPPC11Q7Z392 1133 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 RBBP8NLQ8NC74 664 aaPredicted RBP16.84■□□□□ 0.29
CPSF1-213ENST00000620219 OSBPL9Q96SU4 736 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 KRT12Q99456 494 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 TUBB2BQ9BVA1 445 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 MYH11P35749 1972 aa16.84■□□□□ 0.29
CPSF1-213ENST00000620219 AKR1A1P14550 325 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 257.7 ms