RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FAM47DPA6NHR8 397 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 POTEMA6NI47 508 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SLC16A3O15427 465 aaKnown RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 ENTPD5O75356 428 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 CREB1P16220 341 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 RPS12P25398 132 aaKnown RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SMARCA1P28370 1054 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 PRDX5P30044 214 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 GSTT1P30711 240 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SOX5P35711 763 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 COILP38432 576 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 CDR2Q01850 454 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 MOGSQ13724 837 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 C4orf50Q6ZRC1 276 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 KCNK18Q7Z418 384 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 ZC3H18Q86VM9 953 aaKnown RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 CERS5Q8N5B7 392 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 C12orf50Q8NA57 414 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 AGBL3Q8NEM8 1001 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 TTC8Q8TAM2 541 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 LNX1Q8TBB1 728 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SLCO2A1Q92959 643 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 ZSWIM1Q9BR11 485 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 GCNT4Q9P109 453 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 KLRF2D3W0D1 207 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 CALUO43852 315 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 USP17L8P0C7I0 530 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 PYGBP11216 843 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 ITIH2P19823 946 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 RPL13P26373 211 aaKnown RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SERPINB4P48594 390 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SCNN1DP51172 638 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SLC34A1Q06495 639 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 MPP2Q14168 576 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SLC35G1Q2M3R5 365 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SLC45A4Q5BKX6 768 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 HHATQ5VTY9 493 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SPTY2D1Q68D10 685 aaPredicted RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 TTC27Q6P3X3 843 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 MIGA2Q7L4E1 593 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 GLYCTKQ8IVS8 523 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 MICALL2Q8IY33 904 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SMC1BQ8NDV3 1235 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SCG3Q8WXD2 468 aaKnown RBP11.54□□□□□ -0.56
UPF3A-212ENST00000619079 NCSTNQ92542 709 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 GATA6Q92908 595 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 AZIN2Q96A70 460 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 NDNQ99608 321 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 SIX2Q9NPC8 291 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 UBN1Q9NPG3 1134 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 PHTF1Q9UMS5 762 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 RPS6KL1Q9Y6S9 549 aa11.54□□□□□ -0.56
UPF3A-212ENST00000619079 MAP3K7O43318 606 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 ZWINTO95229 277 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 ABCB4P21439 1286 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 SLC18A1P54219 525 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 AP1B1Q10567 949 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 TCEAL1Q15170 157 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 SCN9AQ15858 1988 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 DCAF17Q5H9S7 520 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-212ENST00000619079 HYIQ5T013 277 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 RBM26Q5T8P6 1007 aaKnown RBP11.53□□□□□ -0.56
UPF3A-212ENST00000619079 FOXB2Q5VYV0 432 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 ZNF449Q6P9G9 518 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 LRRC74BQ6ZQY2 392 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 FAM47EQ6ZV65 393 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 SYDE1Q6ZW31 735 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-212ENST00000619079 EPM2AIP1Q7L775 607 aaPredicted RBP11.53□□□□□ -0.56
UPF3A-212ENST00000619079 NCAPG2Q86XI2 1143 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 ZNF398Q8TD17 642 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 CNKSR2Q8WXI2 1034 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 LZICQ8WZA0 190 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 STMN2Q93045 179 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 MIS12Q9H081 205 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 IL17RBQ9NRM6 502 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 IL1RAPL1Q9NZN1 696 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 TMOD4Q9NZQ9 345 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 TBC1D7Q9P0N9 293 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 DICER1Q9UPY3 1922 aaKnown RBP11.53□□□□□ -0.56
UPF3A-212ENST00000619079 COMMD3-BMI1R4GMX3 469 aa11.53□□□□□ -0.56
UPF3A-212ENST00000619079 A0A1B0GVG6 124 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 IQCA1LA6NCM1 817 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 CCDC22O60826 627 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 T-ENOLP0DO92 83 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 GIT2Q14161 759 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 SPARCL1Q14515 664 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 RCN1Q15293 331 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 SH2D4BQ5SQS7 431 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 RASIP1Q5U651 963 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 SRRM1Q8IYB3 904 aaKnown RBP11.52□□□□□ -0.56
UPF3A-212ENST00000619079 CENPKQ9BS16 269 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 STK33Q9BYT3 514 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 GPBP1L1Q9HC44 474 aaPredicted RBP11.52□□□□□ -0.56
UPF3A-212ENST00000619079 ZNF212Q9UDV6 495 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 ALG6Q9Y672 507 aa11.52□□□□□ -0.56
UPF3A-212ENST00000619079 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.52□□□□□ -0.56
UPF3A-212ENST00000619079 IGSF9BQ9UPX0 1349 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 PDXKO00764 312 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 THAP12O43422 761 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 MUTP22033 750 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms