RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 MICAL1Q8TDZ2 1067 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 KLRG1Q96E93 195 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 TMBIM4Q9HC24 238 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 HOXC10Q9NYD6 342 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 CD2APQ9Y5K6 639 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 EIF3DO15371 548 aaKnown RBP eCLIP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 TTI1O43156 1089 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 DSG3P32926 999 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 IFFO1Q0D2I5 559 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 TRIP13Q15645 432 aaPredicted RBP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 GKAP1Q5VSY0 366 aaPredicted RBP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 SCARA5Q6ZMJ2 495 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 TRIM7Q9C029 511 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 TMEM206Q9H813 350 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 GDF3Q9NR23 364 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 STK24Q9Y6E0 443 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 RPS12P25398 132 aaKnown RBP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 KCNJ1P48048 391 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 CRYMQ14894 314 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 INTS8Q75QN2 995 aaKnown RBP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 THNSL1Q8IYQ7 743 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 DEPTORQ8TB45 409 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 IQCDQ96DY2 449 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 NLRP4Q96MN2 994 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 LRRC4CQ9HCJ2 640 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 GPRC5DQ9NZD1 345 aa15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 NOC2LQ9Y3T9 749 aaKnown RBP15.5■□□□□ 0.07
SHROOM1-208ENST00000617339 SPDYE16A6NNV3 312 aaPredicted RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SART1O43290 800 aaKnown RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 DAPK3O43293 454 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 MYBL1P10243 752 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 FLT3P36888 993 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 MARSP56192 900 aaKnown RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 KRT76Q01546 638 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 ORC1Q13415 861 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 MEI1Q5TIA1 1274 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 ZBED3Q96IU2 234 aaPredicted RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 AGPAT1Q99943 283 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 EDEM3Q9BZQ6 932 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 FBXL5Q9UKA1 691 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SIPA1L1O43166 1804 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 EME2A4GXA9 379 aaPredicted RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 K7ERI5 159 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SLC16A3O15427 465 aaKnown RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 PSAPP07602 524 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 PLCB4Q15147 1175 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 RNF10Q8N5U6 811 aaKnown RBP15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 KRT35Q92764 455 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 ATP6V0A1Q93050 837 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SEL1LQ9UBV2 794 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 LRRC37AA6NMS7 1700 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SV2AQ7L0J3 742 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 ARMC9Q7Z3E5 817 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 TMEM161BQ8NDZ6 487 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 SYT17Q9BSW7 474 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 BTBD7Q9P203 1132 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 FBXO40Q9UH90 709 aa15.49■□□□□ 0.07
SHROOM1-208ENST00000617339 TTLL13PA6NNM8 815 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ERVK-9P63128 1117 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 STRN3Q13033 797 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 STXBP2Q15833 593 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 GLE1Q53GS7 698 aaKnown RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF653Q96CK0 615 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 BORCS6Q96GS4 357 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 HEMGNQ9BXL5 484 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 CCDC113Q9H0I3 377 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 KLHL11Q9NVR0 708 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 COG5Q9UP83 839 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 C10orf71Q711Q0 1435 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ATP6V1G2O95670 118 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 GGPS1O95749 300 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 SLC8A1P32418 973 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 NLRP11P59045 1033 aaKnown RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF280AP59817 542 aaPredicted RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 BMT2Q1RMZ1 405 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 NOP9Q86U38 636 aaKnown RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 CCDC50Q8IVM0 306 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 MTMR14Q8NCE2 650 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 PCDHB18PQ96TA0 734 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 CYP26B1Q9NR63 512 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 BZW2Q9Y6E2 419 aaKnown RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 PJA2O43164 708 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 TRAPPC3O43617 180 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 KRT19P08727 400 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 CYP2C8P10632 490 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF131P52739 623 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 WNT7BP56706 349 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 PPP2R2AP63151 447 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ELF3P78545 371 aaPredicted RBP15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF844Q08AG5 666 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 CCDC63Q8NA47 563 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 PLCD4Q9BRC7 762 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 NEUROG2Q9H2A3 272 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF302Q9NR11 478 aa15.48■□□□□ 0.07
SHROOM1-208ENST00000617339 IFNAR2P48551 515 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 ZNF662Q6ZS27 426 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 WHAMMQ8TF30 809 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 SLC7A3Q8WY07 619 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 KREMEN1Q96MU8 473 aa15.47■□□□□ 0.07
SHROOM1-208ENST00000617339 MPHOSPH6Q99547 160 aaKnown RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms