RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 FEZF2Q8TBJ5 459 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 KCNN1Q92952 543 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 MAGEF1Q9HAY2 307 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 GIT1Q9Y2X7 761 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 MCF2P10911 925 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 GRM5P41594 1212 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 AMPD3Q01432 767 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 CAMK4Q16566 473 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 POF1BQ8WVV4 589 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 SNX27Q96L92 541 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 MSTO1Q9BUK6 570 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 LMBRD1Q9NUN5 540 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 SEL1LQ9UBV2 794 aa14.74□□□□□ -0.05
LINC00540-202ENST00000616974 SMIM28A0A1B0GU29 152 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 NRP1O14786 923 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 INPPL1O15357 1258 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 SKIP12755 728 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 SLC39A11Q8N1S5 342 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 NOC3LQ8WTT2 800 aaKnown RBP14.73□□□□□ -0.05
LINC00540-202ENST00000616974 EEF2KMTQ96G04 330 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 PPP1R10Q96QC0 940 aaKnown RBP14.73□□□□□ -0.05
LINC00540-202ENST00000616974 TUBGCP4Q9UGJ1 667 aa14.73□□□□□ -0.05
LINC00540-202ENST00000616974 PLXNA3P51805 1871 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 HIDE1A8MVS5 230 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 TULP1O00294 542 aaPredicted RBP14.72□□□□□ -0.05
LINC00540-202ENST00000616974 PPEF2O14830 753 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 HOXA2O43364 376 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 BMP6P22004 513 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 OR1G1P47890 313 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 PCDHA5Q9Y5H7 936 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 STYXL1Q9Y6J8 313 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 PVALEFA0A1B0GWK0 134 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 LACTBL1A8MY62 500 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 I3L4J1 428 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 LMBRD2Q68DH5 695 aaPredicted RBP14.72□□□□□ -0.05
LINC00540-202ENST00000616974 CD300LGQ6UXG3 332 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 ZNF507Q8TCN5 953 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 POMGNT1Q8WZA1 660 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 FAM212AQ96EL1 285 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 ACCSQ96QU6 501 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 EXOC1Q9NV70 894 aa14.72□□□□□ -0.05
LINC00540-202ENST00000616974 CPSF3Q9UKF6 684 aaKnown RBP14.72□□□□□ -0.05
LINC00540-202ENST00000616974 PER2O15055 1255 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 KIF4AO95239 1232 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 CLCNKBP51801 687 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 CLEC17AQ6ZS10 378 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 RBM23Q86U06 439 aaKnown RBP14.71□□□□□ -0.05
LINC00540-202ENST00000616974 SYCP3Q8IZU3 236 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 GPT2Q8TD30 523 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 IGSF21Q96ID5 467 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 ZNF558Q96NG5 402 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 ACAP3Q96P50 834 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 GAS2L1Q99501 681 aaPredicted RBP14.71□□□□□ -0.05
LINC00540-202ENST00000616974 FAM213AQ9BRX8 229 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 AGO2Q9UKV8 859 aaKnown RBP14.71□□□□□ -0.05
LINC00540-202ENST00000616974 PCDHB13Q9Y5F0 798 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 PTPRJQ12913 1337 aa14.71□□□□□ -0.05
LINC00540-202ENST00000616974 TTC26A0AVF1 554 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 BIN1O00499 593 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 OGTO15294 1046 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 NFICP08651 508 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 LAG3P18627 525 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 ALDH7A1P49419 539 aaKnown RBP14.71□□□□□ -0.06
LINC00540-202ENST00000616974 XKR4Q5GH76 650 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 CBWD2Q8IUF1 395 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 MAFAQ8NHW3 353 aaPredicted RBP14.71□□□□□ -0.06
LINC00540-202ENST00000616974 URGCPQ8TCY9 931 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 RPS6KC1Q96S38 1066 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 C11orf84Q9BUA3 381 aaPredicted RBP14.71□□□□□ -0.06
LINC00540-202ENST00000616974 CCDC94Q9BW85 323 aaPredicted RBP14.71□□□□□ -0.06
LINC00540-202ENST00000616974 MRPL9Q9BYD2 267 aaKnown RBP14.71□□□□□ -0.06
LINC00540-202ENST00000616974 GPR62Q9BZJ7 368 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 PCDHB12Q9Y5F1 795 aa14.71□□□□□ -0.06
LINC00540-202ENST00000616974 WDFY4Q6ZS81 3184 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 H0YCG3 227 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 RHOBTB3O94955 611 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 THP07101 528 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 ADRB2P07550 413 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 UBE2HP62256 183 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 GRIK3Q13003 919 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 PLPP4Q5VZY2 271 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 EFCAB13Q8IY85 973 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 RDH13Q8NBN7 331 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 LRRC27Q9C0I9 530 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 GZF1Q9H116 711 aaPredicted RBP14.7□□□□□ -0.06
LINC00540-202ENST00000616974 KCTD10Q9H3F6 313 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 AGPAT3Q9NRZ7 376 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 USP25Q9UHP3 1055 aa14.7□□□□□ -0.06
LINC00540-202ENST00000616974 LINC01565O15544 149 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 CD44P16070 742 aaKnown RBP14.69□□□□□ -0.06
LINC00540-202ENST00000616974 CYP2J2P51589 502 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 TCEAL5Q5H9L2 206 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 JADE1Q6IE81 842 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 SPATA20Q8TB22 786 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 P2RX5Q93086 422 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 PYM1Q9BRP8 204 aaKnown RBP14.69□□□□□ -0.06
LINC00540-202ENST00000616974 CNTN3Q9P232 1028 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 STXBP5LQ9Y2K9 1186 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 CASP4P49662 377 aa14.69□□□□□ -0.06
LINC00540-202ENST00000616974 CDR1P51861 262 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms