RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LRRIQ4A6NIV6 560 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 SREBF1P36956 1147 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 ARSEP51690 589 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 OVGP1Q12889 678 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 AOC3Q16853 763 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 C6orf89Q6UWU4 347 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 ERICH1Q86X53 443 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 C1orf131Q8NDD1 294 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 SERPINB12Q96P63 405 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 NAALADL1Q9UQQ1 740 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 ANKRD63C9JTQ0 380 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 TLR3O15455 904 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 DCTN3O75935 186 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 PPP3CAQ08209 521 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 SNRNP35Q16560 246 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 PLA2G4FQ68DD2 849 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 BTNL9Q6UXG8 535 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 MAK16Q9BXY0 300 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 TTC4O95801 387 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 NUDT17P0C025 328 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 ECHS1P30084 290 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 CHKAP35790 457 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 MAGEA4P43358 317 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 TTC27Q6P3X3 843 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 CYFIP1Q7L576 1253 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 APBB1IPQ7Z5R6 666 aaPredicted RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 NOP9Q86U38 636 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 ZC3H18Q86VM9 953 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 UBN1Q9NPG3 1134 aa13.4□□□□□ -0.26
LIG1-221ENST00000613670 CNOT7Q9UIV1 285 aaKnown RBP13.4□□□□□ -0.26
LIG1-221ENST00000613670 TXNDC9O14530 226 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 GYG2O15488 501 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 CIB2O75838 187 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 UPP2O95045 317 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 KRT16P08779 473 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 RFX1P22670 979 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 PHBP35232 272 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 ECE1P42892 770 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 MAML1Q92585 1016 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 RPS6KC1Q96S38 1066 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 CYTH2Q99418 400 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 UNC45AQ9H3U1 944 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 KIF9Q9HAQ2 790 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 NYAP2Q9P242 653 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 UVRAGQ9P2Y5 699 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 ARHGAP42A6NI28 874 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 PIAS1O75925 651 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 ESRRAP11474 423 aaPredicted RBP13.39□□□□□ -0.27
LIG1-221ENST00000613670 KRT10P13645 584 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 RRM1P23921 792 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 CENPUQ71F23 418 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 OSBPL8Q9BZF1 889 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 ZWILCHQ9H900 591 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 SIX2Q9NPC8 291 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 FBXO28Q9NVF7 368 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 GTF3C4Q9UKN8 822 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 PCDHA2Q9Y5H9 948 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 PCDHAC2Q9Y5I4 1007 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 MT-ND3P03897 115 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 P4HBP07237 508 aaKnown RBP13.39□□□□□ -0.27
LIG1-221ENST00000613670 KRT19P08727 400 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 CYP11B1P15538 503 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 QARSP47897 775 aaKnown RBP13.39□□□□□ -0.27
LIG1-221ENST00000613670 IRX4P78413 519 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 TRPC3Q13507 836 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 STAT4Q14765 748 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 DCAF12L1Q5VU92 463 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 MORC4Q8TE76 937 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 CENPTQ96BT3 561 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 TSC22D3Q99576 134 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 MRPL47Q9HD33 250 aaKnown RBP13.39□□□□□ -0.27
LIG1-221ENST00000613670 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.39□□□□□ -0.274e-7■■■■□ 20.6
LIG1-221ENST00000613670 SEPT9Q9UHD8 586 aaPredicted RBP13.39□□□□□ -0.27
LIG1-221ENST00000613670 NEU2Q9Y3R4 380 aa13.39□□□□□ -0.27
LIG1-221ENST00000613670 I3L4J1 428 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 VCAM1P19320 739 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 BPIFB4P59827 614 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 CDR2Q01850 454 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 LMNB2Q03252 620 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 ARHGEF16Q5VV41 709 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 ETNPPLQ8TBG4 499 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 TAS1R2Q8TE23 839 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 TLCD1Q96CP7 247 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 GBP5Q96PP8 586 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 USH1CQ9Y6N9 552 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 CAV1Q03135 178 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 RRP1BQ14684 758 aaKnown RBP13.38□□□□□ -0.27
LIG1-221ENST00000613670 RASIP1Q5U651 963 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 RHOT1Q8IXI2 618 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 MTFR1LQ9H019 292 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 BATF3Q9NR55 127 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 USP21Q9UK80 565 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 PHTF1Q9UMS5 762 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 INHBAP08476 426 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 NCALDP61601 193 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 NOP14P78316 857 aaKnown RBP13.38□□□□□ -0.27
LIG1-221ENST00000613670 MTMR1Q13613 665 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 DLGAP5Q15398 846 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 HYIQ5T013 277 aa13.38□□□□□ -0.27
LIG1-221ENST00000613670 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms