RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 COLGALT2Q8IYK4 626 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 GAS2L1Q99501 681 aaPredicted RBP18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 CBWD1Q9BRT8 395 aa18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 CPSF3Q9UKF6 684 aaKnown RBP18.04■□□□□ 0.48
CCDC28A-202ENST00000611852 SMIM28A0A1B0GU29 152 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 NT5C1B-RDH14C9J2C7 533 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 FGF18O76093 207 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SMC2O95347 1197 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 PPM1AP35813 382 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SLC11A1P49279 550 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ACOT2P49753 483 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ENOX2Q16206 610 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 KNOP1Q1ED39 458 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 GLRA4Q5JXX5 417 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SLC39A11Q8N1S5 342 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SMARCE1Q969G3 411 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 PPP1R10Q96QC0 940 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 TMEM175Q9BSA9 504 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 PLEKHA5Q9HAU0 1116 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ALG13Q9NP73 1137 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 RMND1Q9NWS8 449 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SPG21Q9NZD8 308 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 CNTN3Q9P232 1028 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 TTC26A0AVF1 554 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 CARNS1A5YM72 827 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 GOLGA6L22H0YM25 854 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 GRM6O15303 877 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 TUSC3Q13454 348 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ARMCX5Q6P1M9 558 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 CRELD2Q6UXH1 353 aaPredicted RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ZSWIM2Q8NEG5 633 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 SPPL3Q8TCT6 385 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 ZMAT2Q96NC0 199 aaKnown RBP18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 AGPAT3Q9NRZ7 376 aa18.03■□□□□ 0.48
CCDC28A-202ENST00000611852 NRP1O14786 923 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 ALDH2P05091 517 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 ADRB2P07550 413 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 KCNE1P15382 129 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 FOSL2P15408 326 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 POU3F3P20264 500 aaPredicted RBP18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 SNRPFP62306 86 aaKnown RBP18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 PLCB3Q01970 1234 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 TMEM173Q86WV6 379 aaPredicted RBP18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 SAAL1Q96ER3 474 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 PCIF1Q9H4Z3 704 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 RPF1Q9H9Y2 349 aaKnown RBP18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 FAN1Q9Y2M0 1017 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 PLXNA4Q9HCM2 1894 aa18.02■□□□□ 0.47
CCDC28A-202ENST00000611852 PRRC2BQ5JSZ5 2229 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 LDHAP00338 332 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 IGFBP4P22692 258 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 OR1G1P47890 313 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 POU5F1Q01860 360 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 PPP2R3AQ06190 1150 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 HS2ST1Q7LGA3 356 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 BCL7CQ8WUZ0 217 aaPredicted RBP18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 IGSF21Q96ID5 467 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 FAM213AQ9BRX8 229 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 KCTD10Q9H3F6 313 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 CGNQ9P2M7 1197 aaKnown RBP18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 CACNG4Q9UBN1 327 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 MAPK8IP1Q9UQF2 711 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 MTCH2Q9Y6C9 303 aa18.01■□□□□ 0.47
CCDC28A-202ENST00000611852 LACTBL1A8MY62 500 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 KIAA0391O15091 583 aaKnown RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 CLIC2O15247 247 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 KIF20AO95235 890 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 DNAJB1P25685 340 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 UBE3AQ05086 875 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 SOX4Q06945 474 aaPredicted RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 CAMK1Q14012 370 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 CAMK4Q16566 473 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 ZNF658Q5TYW1 1059 aaPredicted RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 SMYD4Q8IYR2 804 aaPredicted RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 GPD1LQ8N335 351 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 GUF1Q8N442 669 aaKnown RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 MRPL38Q96DV4 380 aaKnown RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 PAAF1Q9BRP4 392 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 LMAN2LQ9H0V9 348 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 MARCH5Q9NX47 278 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 HSPBP1Q9NZL4 362 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 LMCD1Q9NZU5 365 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 LZTS1Q9Y250 596 aa18■□□□□ 0.47
CCDC28A-202ENST00000611852 PRG3Q9Y2Y8 225 aaPredicted RBP18■□□□□ 0.47
CCDC28A-202ENST00000611852 PDCD11Q14690 1871 aaKnown RBP17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 GOLGA8IPA6NC78 632 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 CASTOR2A6NHX0 329 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 GOLGA8JA6NMD2 632 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 PDXKO00764 312 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 EXTL3O43909 919 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 KRT17Q04695 432 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 SPAG1Q07617 926 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 PTPROQ16827 1216 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 CD302Q8IX05 232 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 C12orf56Q8IXR9 622 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 GOLGA5Q8TBA6 731 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 POF1BQ8WVV4 589 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 RABGGTAQ92696 567 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 FAM212AQ96EL1 285 aa17.99■□□□□ 0.47
CCDC28A-202ENST00000611852 TMEM169Q96HH4 297 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms