RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RASA4O43374 803 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 AP1G2O75843 785 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 CTNNA2P26232 953 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 DRG2P55039 364 aaKnown RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 CERKLQ49MI3 558 aaPredicted RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 TAB3Q8N5C8 712 aaPredicted RBP19.6■□□□□ 0.73
UPF1-210ENST00000600689 FBF1Q8TES7 1133 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 BORCS6Q96GS4 357 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 RUNDC3BQ96NL0 473 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 NAALADL1Q9UQQ1 740 aa19.6■□□□□ 0.73
UPF1-210ENST00000600689 EPHB2P29323 1055 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 PEX5P50542 639 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 TDRD3Q9H7E2 651 aaKnown RBP19.59■□□□□ 0.73
UPF1-210ENST00000600689 PARVGQ9HBI0 331 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 BATF3Q9NR55 127 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 ENTPD5O75356 428 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 TUBP50607 506 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 JAG1P78504 1218 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 NOP9Q86U38 636 aaKnown RBP19.59■□□□□ 0.73
UPF1-210ENST00000600689 LONP2Q86WA8 852 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 SIAH1Q8IUQ4 282 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 SIPA1L1O43166 1804 aa19.59■□□□□ 0.73
UPF1-210ENST00000600689 MIF4GDA9UHW6 222 aaKnown RBP19.58■□□□□ 0.73
UPF1-210ENST00000600689 H0YIN7 160 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 PPP3CAQ08209 521 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 GPATCH4Q5T3I0 446 aaKnown RBP19.58■□□□□ 0.73
UPF1-210ENST00000600689 SLFN13Q68D06 897 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 BTNL9Q6UXG8 535 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 SLC5A5Q92911 643 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 NUDCD1Q96RS6 583 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 HERPUD2Q9BSE4 406 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 CCDC134Q9H6E4 229 aa19.58■□□□□ 0.73
UPF1-210ENST00000600689 MAP3K13O43283 966 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 CFBP00751 764 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 BCRP11274 1271 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 CTCFP49711 727 aaPredicted RBP19.58■□□□□ 0.72
UPF1-210ENST00000600689 SPDYCQ5MJ68 293 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 SYT11Q9BT88 431 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 ANAPC5Q9UJX4 755 aa19.58■□□□□ 0.72
UPF1-210ENST00000600689 DPPA5A6NC42 116 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 SPDYE5A6NIY4 337 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 LGR5O75473 907 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 LINGO3P0C6S8 592 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 BFSP1Q12934 665 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 STRIP1Q5VSL9 837 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 RFX8Q6ZV50 586 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 SUPT20HQ8NEM7 779 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 LENG9Q96B70 501 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 KLHL11Q9NVR0 708 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 R3HDM2Q9Y2K5 976 aaKnown RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 ALADP13716 330 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 GM2AP17900 193 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 IRX1P78414 480 aaPredicted RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 GRIK3Q13003 919 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 SETDB1Q15047 1291 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 DHX38Q92620 1227 aaKnown RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 PPP1R12CQ9BZL4 782 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 KIAA1683Q9H0B3 1180 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 ZCWPW1Q9H0M4 648 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 METTL5Q9NRN9 209 aaKnown RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 NINJ2Q9NZG7 142 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 EYA4O95677 639 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 ANXA13P27216 316 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 RWDD2BP57060 319 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 PPP1R18Q6NYC8 613 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 GBP7Q8N8V2 638 aaPredicted RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 CBWD1Q9BRT8 395 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 ALG13Q9NP73 1137 aaKnown RBP19.57■□□□□ 0.72
UPF1-210ENST00000600689 PI4KBQ9UBF8 816 aa19.57■□□□□ 0.72
UPF1-210ENST00000600689 UNC5CO95185 931 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 TTC4O95801 387 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 ATF2P15336 505 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 TAC1P20366 129 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 DCTN4Q9UJW0 460 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 USTQ9Y2C2 406 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 GTPBP10A4D1E9 387 aaKnown RBP19.56■□□□□ 0.72
UPF1-210ENST00000600689 K7ENM7 598 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 O00370 1275 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 SMIM24O75264 130 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 GJB6O95452 261 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 MXRA7P84157 204 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 GSTA5Q7RTV2 222 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 C12orf65Q9H3J6 166 aaKnown RBP19.56■□□□□ 0.72
UPF1-210ENST00000600689 PIDD1Q9HB75 910 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 ZFATQ9P243 1243 aa19.56■□□□□ 0.72
UPF1-210ENST00000600689 GREB1LQ9C091 1923 aaPredicted RBP19.56■□□□□ 0.72
UPF1-210ENST00000600689 KRT15P19012 456 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 SIX1Q15475 284 aaPredicted RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 TRMT10CQ7L0Y3 403 aaKnown RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 ASRGL1Q7L266 308 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 SERPINB12Q96P63 405 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 WRAP73Q9P2S5 460 aaPredicted RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 ANAPC7Q9UJX3 599 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 TP73O15350 636 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 HOXA7P31268 230 aaPredicted RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 GBP1P32455 592 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 WDR4P57081 412 aaKnown RBP19.55■□□□□ 0.72
UPF1-210ENST00000600689 FAM182AQ5T1J6 154 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 MFSD5Q6N075 450 aa19.55■□□□□ 0.72
UPF1-210ENST00000600689 ARHGEF18Q6ZSZ5 1173 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms