RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 HYAL1Q12794 435 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 NOLC1Q14978 699 aaKnown RBP eCLIP17.71■□□□□ 0.439e-14■■■■■ 27.3
LSM4-206ENST00000600289 NAB2Q15742 525 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 SFR1Q86XK3 245 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 BCL7CQ8WUZ0 217 aaPredicted RBP17.71■□□□□ 0.43
LSM4-206ENST00000600289 CCDC94Q9BW85 323 aaPredicted RBP17.71■□□□□ 0.43
LSM4-206ENST00000600289 ZBP1Q9H171 429 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 FAM86C1Q9NVL1 165 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 FAN1Q9Y2M0 1017 aa17.71■□□□□ 0.43
LSM4-206ENST00000600289 FAM237AA0A1B0GTK4 181 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 NT5C1B-RDH14C9J2C7 533 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 NR1I2O75469 434 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 CMA1P23946 247 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 NMT1P30419 496 aaKnown RBP17.7■□□□□ 0.42
LSM4-206ENST00000600289 AMPD3Q01432 767 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 TUSC3Q13454 348 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 HERC4Q5GLZ8 1057 aaPredicted RBP17.7■□□□□ 0.42
LSM4-206ENST00000600289 ALKAL1Q6UXT8 129 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 ZNF720Q7Z2F6 126 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 BMP8AQ7Z5Y6 402 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 ADHFE1Q8IWW8 467 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 RNF168Q8IYW5 571 aaPredicted RBP17.7■□□□□ 0.42
LSM4-206ENST00000600289 CEP120Q8N960 986 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 DHX58Q96C10 678 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 CDCA3Q99618 268 aaPredicted RBP17.7■□□□□ 0.42
LSM4-206ENST00000600289 TCF25Q9BQ70 676 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 TRIM9Q9C026 710 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 ZHX3Q9H4I2 956 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 TOPORSQ9NS56 1045 aaPredicted RBP17.7■□□□□ 0.42
LSM4-206ENST00000600289 MARCH5Q9NX47 278 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 KLK14Q9P0G3 267 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 MUTYHQ9UIF7 546 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 IRAK3Q9Y616 596 aa17.7■□□□□ 0.42
LSM4-206ENST00000600289 HNRNPDLO14979 420 aaKnown RBP17.69■□□□□ 0.42
LSM4-206ENST00000600289 POLR2DO15514 142 aaKnown RBP17.69■□□□□ 0.42
LSM4-206ENST00000600289 CLDN3O15551 220 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 THP07101 528 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 ALCAMQ13740 583 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 SMC1AQ14683 1233 aaKnown RBP17.69■□□□□ 0.42
LSM4-206ENST00000600289 KYAT1Q16773 422 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 ADGRD2Q7Z7M1 963 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 EFHBQ8N7U6 833 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 ZBTB45Q96K62 511 aaPredicted RBP17.69■□□□□ 0.42
LSM4-206ENST00000600289 PPP1R10Q96QC0 940 aaKnown RBP17.69■□□□□ 0.42
LSM4-206ENST00000600289 C7orf25Q9BPX7 421 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 TCHPQ9BT92 498 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 ENTPD7Q9NQZ7 604 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 KCNH3Q9ULD8 1083 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 HPSEQ9Y251 543 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 GDAQ9Y2T3 454 aa17.69■□□□□ 0.42
LSM4-206ENST00000600289 VWA8A3KMH1 1905 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 FAM189A1O60320 539 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 CTSAP10619 480 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 PTPRZ1P23471 2315 aaPredicted RBP17.68■□□□□ 0.42
LSM4-206ENST00000600289 OR1G1P47890 313 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 LIG4P49917 911 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 YARSP54577 528 aaKnown RBP17.68■□□□□ 0.42
LSM4-206ENST00000600289 BMS1Q14692 1282 aaKnown RBP17.68■□□□□ 0.42
LSM4-206ENST00000600289 DUSP6Q16828 381 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 ZBTB33Q86T24 672 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 CCDC65Q8IXS2 484 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 MRPL43Q8N983 215 aaKnown RBP17.68■□□□□ 0.42
LSM4-206ENST00000600289 BICD1Q96G01 975 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 ACAP3Q96P50 834 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 HERC2P3Q9BVR0 1158 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 COLEC11Q9BWP8 271 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 VN1R3Q9BXE9 311 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 HAPLN2Q9GZV7 340 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 CXCL16Q9H2A7 254 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 MRPL44Q9H9J2 332 aaKnown RBP17.68■□□□□ 0.42
LSM4-206ENST00000600289 PANK4Q9NVE7 773 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 CNTN3Q9P232 1028 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 ANKFY1Q9P2R3 1169 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 USP25Q9UHP3 1055 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 PCDHGC5Q9Y5F6 944 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 STYXL1Q9Y6J8 313 aa17.68■□□□□ 0.42
LSM4-206ENST00000600289 CACNA1BQ00975 2339 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 A0A1W2PQ27 194 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 A0A1W2PQ64 194 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 A0A1W2PQD8 194 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 IDEP14735 1019 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 KCNE1P15382 129 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 ADAM15Q13444 863 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 KCNC3Q14003 757 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 ZC2HC1CQ53FD0 456 aaPredicted RBP17.67■□□□□ 0.42
LSM4-206ENST00000600289 PLPP4Q5VZY2 271 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 SLC39A4Q6P5W5 647 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 TMC7Q7Z402 723 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 VPS52Q8N1B4 723 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 MICAL1Q8TDZ2 1067 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 CHAMP1Q96JM3 812 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 PRRX2Q99811 253 aa17.67■□□□□ 0.42
LSM4-206ENST00000600289 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.67■□□□□ 0.42
LSM4-206ENST00000600289 MTCL1Q9Y4B5 1905 aaKnown RBP17.66■□□□□ 0.42
LSM4-206ENST00000600289 KMT2BQ9UMN6 2715 aaPredicted RBP17.66■□□□□ 0.42
LSM4-206ENST00000600289 FAM186AA6NE01 2351 aa17.66■□□□□ 0.42
LSM4-206ENST00000600289 A0A0B4J269 797 aa17.66■□□□□ 0.42
LSM4-206ENST00000600289 C2orf71A6NGG8 1288 aa17.66■□□□□ 0.42
LSM4-206ENST00000600289 HIDE1A8MVS5 230 aa17.66■□□□□ 0.42
LSM4-206ENST00000600289 TMEM189-UBE2V1I3L0A0 370 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms