RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	TBCA	O75347	108 aa	Known RBP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	CTSA	P10619	480 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	XRCC6	P12956	609 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	CD44	P16070	742 aa	Known RBP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	ZNF165	P49910	485 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	NUBP1	P53384	320 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	RNASEL	Q05823	741 aa	Known RBP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	NOMO2	Q5JPE7	1267 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	KIAA1841	Q6NSI8	718 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	MAEA	Q7L5Y9	396 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	OTUD6A	Q7L8S5	288 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	CATSPER4	Q7RTX7	472 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	DDX53	Q86TM3	631 aa	Known RBP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	TMEM173	Q86WV6	379 aa	Predicted RBP	13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	CCDC65	Q8IXS2	484 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	AOPEP	Q8N6M6	819 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	LPP	Q93052	612 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	IGSF21	Q96ID5	467 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	CEP170P1	Q96L14	293 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	NLRP4	Q96MN2	994 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	NRDE2	Q9H7Z3	1164 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	TBC1D13	Q9NVG8	400 aa		13.9	□□□□□ -0.18
UPF1-208	ENST00000600012	FRMD3	A2A2Y4	597 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	FAM13A	O94988	1023 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	GALT	P07902	379 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	EHHADH	Q08426	723 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	STK4	Q13043	487 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	MAPK7	Q13164	816 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	RARS2	Q5T160	578 aa	Known RBP	13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	KLHL10	Q6JEL2	608 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	LUZP1	Q86V48	1076 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	PPFIBP1	Q86W92	1011 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	SFR1	Q86XK3	245 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	TDRD5	Q8NAT2	981 aa	Known RBP	13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	MLKL	Q8NB16	471 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	KIAA0895	Q8NCT3	520 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	AUTS2	Q8WXX7	1259 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	PGBD4	Q96DM1	585 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	GRPEL1	Q9HAV7	217 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	SLC39A2	Q9NP94	309 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	CYP26B1	Q9NR63	512 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	AGPAT5	Q9NUQ2	364 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	KCND2	Q9NZV8	630 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	TBC1D7	Q9P0N9	293 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	STK39	Q9UEW8	545 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	DACH1	Q9UI36	760 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	CTNND2	Q9UQB3	1225 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	MAPK8IP1	Q9UQF2	711 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	INPP5F	Q9Y2H2	1132 aa		13.89	□□□□□ -0.19
UPF1-208	ENST00000600012	MEIS3P2	A8K0S8	358 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	PPP1R3G	B7ZBB8	358 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	HIP1R	O75146	1068 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	OFD1	O75665	1012 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	PDGFB	P01127	241 aa	Predicted RBP	13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	EPCAM	P16422	314 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	GUCY2C	P25092	1073 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	IQCB1	Q15051	598 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	FAM26F	Q5R3K3	315 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	ATAT1	Q5SQI0	421 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	KSR1	Q8IVT5	923 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	DHX40	Q8IX18	779 aa	Known RBP	13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	EXOC8	Q8IYI6	725 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	ZDHHC14	Q8IZN3	488 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	DAW1	Q8N136	415 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	C12orf76	Q8N812	135 aa	Predicted RBP	13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	GLIS3	Q8NEA6	775 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	URGCP	Q8TCY9	931 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	SLC22A17	Q8WUG5	538 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	BCL7C	Q8WUZ0	217 aa	Predicted RBP	13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	SLC7A3	Q8WY07	619 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	FGFBP2	Q9BYJ0	223 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	NAT10	Q9H0A0	1025 aa	Known RBP	13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	IFT122	Q9HBG6	1241 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	GPRC5C	Q9NQ84	441 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	ODF2L	Q9ULJ1	636 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	UST	Q9Y2C2	406 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	PPME1	Q9Y570	386 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	COL4A3BP	Q9Y5P4	624 aa		13.88	□□□□□ -0.19
UPF1-208	ENST00000600012	C2orf16	Q68DN1	1984 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	SFI1	A8K8P3	1242 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	CAVIN2	O95810	425 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	WEE2	P0C1S8	567 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	PRCP	P42785	496 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	SLC11A1	P49279	550 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	STX17	P56962	302 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	PTPN14	Q15678	1187 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	SRGAP1	Q7Z6B7	1085 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	ADSSL1	Q8N142	457 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	PLCD3	Q8N3E9	789 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	PSPC1	Q8WXF1	523 aa	Known RBP	13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	BPIFA3	Q9BQP9	254 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	GBP3	Q9H0R5	595 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	SFXN1	Q9H9B4	322 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	XPNPEP1	Q9NQW7	623 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	DNAJB4	Q9UDY4	337 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	PCDHB2	Q9Y5E7	798 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	CNTNAP2	Q9UHC6	1331 aa		13.87	□□□□□ -0.19
UPF1-208	ENST00000600012	GAS2	O43903	313 aa	Known RBP	13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	GFRA3	O60609	400 aa		13.86	□□□□□ -0.19
UPF1-208	ENST00000600012	GAP43	P17677	238 aa		13.86	□□□□□ -0.19

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