RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 F5P12259 2224 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 SLC37A4O43826 429 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 KIF4AO95239 1232 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 NPTXRO95502 500 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 IFNAR1P17181 557 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 RAB33AQ14088 237 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 NTRK3Q16288 839 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 AMHR2Q16671 573 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 XKR9Q5GH70 373 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 PRR23BQ6ZRT6 265 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 HASPINQ8TF76 798 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 ELSPBP1Q96BH3 223 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 PAAF1Q9BRP4 392 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 NFKBIZQ9BYH8 718 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 SEMA4GQ9NTN9 838 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 HCFC1R1Q9NWW0 138 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 KLK14Q9P0G3 267 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 DNMT3BQ9UBC3 853 aaKnown RBP11.25□□□□□ -0.61
TRIM28-210ENST00000597618 PARP2Q9UGN5 583 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 ANGPTL2Q9UKU9 493 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 NDRG2Q9UN36 371 aaKnown RBP11.25□□□□□ -0.61
TRIM28-210ENST00000597618 FRYQ5TBA9 3013 aa11.25□□□□□ -0.61
TRIM28-210ENST00000597618 A0A1B0GUA9 196 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 CASTOR2A6NHX0 329 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 ADAM12O43184 909 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 B4GALT5O43286 388 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 CAPSQ13938 189 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 EPHA7Q15375 998 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 CSRP2Q16527 193 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 GALNT17Q6IS24 598 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-210ENST00000597618 PRR23CQ6ZRP0 262 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 TRIM22Q8IYM9 498 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 BLIDQ8IZY5 108 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 FAM177A1Q8N128 213 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-210ENST00000597618 ZNF687Q8N1G0 1237 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 DAGLBQ8NCG7 672 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 ZSWIM4Q9H7M6 989 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 BRD9Q9H8M2 597 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 KCNMB3Q9NPA1 279 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 AVENQ9NQS1 362 aaPredicted RBP11.24□□□□□ -0.61
TRIM28-210ENST00000597618 XPNPEP1Q9NQW7 623 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 CACNG4Q9UBN1 327 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 TDRD15B5MCY1 1934 aaKnown RBP11.24□□□□□ -0.61
TRIM28-210ENST00000597618 ASPMQ8IZT6 3477 aa11.24□□□□□ -0.61
TRIM28-210ENST00000597618 ANKRD11Q6UB99 2663 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-210ENST00000597618 DOCK6Q96HP0 2047 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 SHISA7A6NL88 538 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 M0R2N6 131 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 RHOP08100 348 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 CPA1P15085 419 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 GCFC2P16383 781 aaKnown RBP11.23□□□□□ -0.61
TRIM28-210ENST00000597618 OR1D2P34982 312 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 SIM2Q14190 667 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-210ENST00000597618 INF2Q27J81 1249 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 SLC5A9Q2M3M2 681 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 TANGO2Q6ICL3 276 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 KRT25Q7Z3Z0 450 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.23□□□□□ -0.61
TRIM28-210ENST00000597618 FBXL16Q8N461 479 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 ASAP3Q8TDY4 903 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 MCRS1Q96EZ8 462 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 PLA2G2FQ9BZM2 168 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 MTRRQ9UBK8 725 aa11.23□□□□□ -0.61
TRIM28-210ENST00000597618 TBX3O15119 743 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 ZZEF1O43149 2961 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 DGAT1O75907 488 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 THP07101 528 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CEBPBP17676 345 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 KCNA4P22459 653 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 FGFR3P22607 806 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 FCARP24071 287 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CNR2P34972 360 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 ARL2P36404 184 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CXCL12P48061 93 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CYP4A11Q02928 519 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 ZFYVE26Q68DK2 2539 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 IL31Q6EBC2 164 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 NCAPH2Q6IBW4 605 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 PPP4R3AQ6IN85 833 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 BLOC1S2Q6QNY1 142 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CDR2LQ86X02 465 aaPredicted RBP11.22□□□□□ -0.61
TRIM28-210ENST00000597618 FAM3CQ92520 227 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 IRF7Q92985 503 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 DYDC2Q96IM9 177 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 PRIMPOLQ96LW4 560 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CCDC43Q96MW1 224 aaKnown RBP11.22□□□□□ -0.61
TRIM28-210ENST00000597618 JAKMIP1Q96N16 626 aaKnown RBP11.22□□□□□ -0.61
TRIM28-210ENST00000597618 TRMT61BQ9BVS5 477 aaKnown RBP11.22□□□□□ -0.61
TRIM28-210ENST00000597618 ZFP14Q9HCL3 533 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 TRPV5Q9NQA5 729 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 RGL1Q9NZL6 768 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 CDY1Q9Y6F8 540 aa11.22□□□□□ -0.61
TRIM28-210ENST00000597618 TMEM189-UBE2V1I3L0A0 370 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 PTGESO14684 152 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 ZBTB39O15060 712 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 MARCH6O60337 910 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 MICAL2O94851 1124 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 DEXIO95424 95 aa11.21□□□□□ -0.61
TRIM28-210ENST00000597618 LRG1P02750 347 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms