RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 KRT17Q04695 432 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 GABPAQ06546 454 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 STK3Q13188 491 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 HTR4Q13639 388 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 GNL2Q13823 731 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 NID2Q14112 1375 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 STK38Q15208 465 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 LY6KQ17RY6 165 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 WHAMMP3Q1A5X7 153 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 MAP9Q49MG5 647 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 GREB1Q4ZG55 1949 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 HSP90B2PQ58FF3 399 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 BEND6Q5SZJ8 279 aaPredicted RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 HIST2H2BCQ6DN03 193 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 FBN3Q75N90 2809 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TRIM46Q7Z4K8 759 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TADA2BQ86TJ2 420 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ZNF589Q86UQ0 364 aaPredicted RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 KBTBD6Q86V97 674 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 MRPL43Q8N983 215 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 MORC4Q8TE76 937 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 AUTS2Q8WXX7 1259 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 NANOS1Q8WY41 292 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 GLG1Q92896 1179 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 IRF7Q92985 503 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 NXPE3Q969Y0 559 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 DHX58Q96C10 678 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ZNF274Q96GC6 653 aaPredicted RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 NEUROD6Q96NK8 337 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CEP89Q96ST8 783 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 EIF3CQ99613 913 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 BAG1Q99933 345 aaPredicted RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 SDF4Q9BRK5 362 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 DSCC1Q9BVC3 393 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 PARD6BQ9BYG5 372 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 HSD3B7Q9H2F3 369 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 CHRDQ9H2X0 955 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ANKZF1Q9H8Y5 726 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TMEM9BQ9NQ34 198 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 TYW1Q9NV66 732 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 VPS18Q9P253 973 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 MYO1AQ9UBC5 1043 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ZMYM2Q9UBW7 1377 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 ADD3Q9UEY8 706 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 IL17BQ9UHF5 180 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 LCMT1Q9UIC8 334 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 HOOK1Q9UJC3 728 aaKnown RBP4.59□□□□□ -1.67
LIG3-211ENST00000588713 DNMT3LQ9UJW3 386 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 PCDHA7Q9UN72 937 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 LZTS1Q9Y250 596 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 HPSEQ9Y251 543 aa4.59□□□□□ -1.67
LIG3-211ENST00000588713 FOCADQ5VW36 1801 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CLUHO75153 1309 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 ITIH6Q6UXX5 1313 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 A0A087WUV0 522 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 A0A087WV48 116 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SPTLC2O15270 562 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 KIF5CO60282 957 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CAND2O75155 1236 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PPP6R2O75170 966 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CTDNEP1O95476 244 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CXCL14O95715 111 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 NDUFB10O96000 172 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 F2P00734 622 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SERPINC1P01008 464 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CYP2D6P10635 497 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SCG2P13521 617 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PFKFB1P16118 471 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 LAG3P18627 525 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CYP7A1P22680 504 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CALML3P27482 149 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 HOXC13P31276 330 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 GMPRP36959 345 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CXCL12P48061 93 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 RFX5P48382 616 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 UBASH3AP57075 661 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SNAP25P60880 206 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PLCB3Q01970 1234 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CREB5Q02930 508 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 ARHGAP1Q07960 439 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CYP4F3Q08477 520 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 BAATQ14032 418 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 LPIN1Q14693 890 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SF3A1Q15459 793 aaKnown RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 LINC01559Q495D7 138 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CT47A1Q5JQC4 288 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 MYSM1Q5VVJ2 828 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SPECC1LQ69YQ0 1117 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 WDR93Q6P2C0 686 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 PCSK4Q6UW60 755 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 ZNF852Q6ZMS4 543 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 SEPT14Q6ZU15 432 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 DHX32Q7L7V1 743 aaKnown RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 RASGRP2Q7LDG7 609 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CACNA2D4Q7Z3S7 1137 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 RAB44Q7Z6P3 723 aaPredicted RBP4.58□□□□□ -1.68
LIG3-211ENST00000588713 FMNL3Q8IVF7 1028 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 TRIML1Q8N9V2 468 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CNNM3Q8NE01 707 aa4.58□□□□□ -1.68
LIG3-211ENST00000588713 CCDC12Q8WUD4 166 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms