RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.1□□□□□ -0.31
LIG3-209ENST00000586435 LNX1Q8TBB1 728 aaPredicted RBP13.1□□□□□ -0.31
LIG3-209ENST00000586435 GPR152Q8TDT2 470 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 HASPINQ8TF76 798 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 RABGGTAQ92696 567 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 SEMA4AQ9H3S1 761 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 TBC1D17Q9HA65 648 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 ARHGEF3Q9NR81 526 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 SNTG2Q9NY99 539 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 NUMBLQ9Y6R0 609 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 CACNA1IQ9P0X4 2223 aa13.1□□□□□ -0.31
LIG3-209ENST00000586435 PATJQ8NI35 1801 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 EP300Q09472 2414 aaPredicted RBP13.09□□□□□ -0.31
LIG3-209ENST00000586435 ARHGEF35A5YM69 484 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 EDN1P05305 212 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 C8AP07357 584 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 RFX1P22670 979 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 FSHRP23945 695 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 NEK4P51957 841 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 FOSBP53539 338 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 PDCD11Q14690 1871 aaKnown RBP13.09□□□□□ -0.31
LIG3-209ENST00000586435 RTL10Q7L3V2 364 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 DEPTORQ8TB45 409 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 FOXP1Q9H334 677 aaPredicted RBP13.09□□□□□ -0.31
LIG3-209ENST00000586435 DLGAP2Q9P1A6 1054 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 CDH7Q9ULB5 785 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 CA14Q9ULX7 337 aa13.09□□□□□ -0.31
LIG3-209ENST00000586435 XYLBO75191 536 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 FGFR3P22607 806 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 EFNA5P52803 228 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 RAB33AQ14088 237 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 TMEM132AQ24JP5 1023 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 UVSSAQ2YD98 709 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 PPM1LQ5SGD2 360 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 EEF1DP3Q658K8 133 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 MTSS1LQ765P7 747 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 GRASPQ7Z6J2 395 aaPredicted RBP13.08□□□□□ -0.32
LIG3-209ENST00000586435 CEP57Q86XR8 500 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 NOSTRINQ8IVI9 506 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 ADSSL1Q8N142 457 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 KIFAP3Q92845 792 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 UROC1Q96N76 676 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 CXCL16Q9H2A7 254 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 MTRRQ9UBK8 725 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 MYH11P35749 1972 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 OTOGLQ3ZCN5 2332 aa13.08□□□□□ -0.32
LIG3-209ENST00000586435 STK25O00506 426 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 TRAPPC10P48553 1259 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 FXR2P51116 673 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG3-209ENST00000586435 STARD6P59095 220 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 DCLRE1AQ6PJP8 1040 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 APBB1IPQ7Z5R6 666 aaPredicted RBP13.07□□□□□ -0.32
LIG3-209ENST00000586435 FGF13Q92913 245 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 FGF14Q92915 247 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 C8orf76Q96K31 380 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 IFT74Q96LB3 600 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 PPP1R10Q96QC0 940 aaKnown RBP13.07□□□□□ -0.32
LIG3-209ENST00000586435 LLPHQ9BRT6 129 aaKnown RBP13.07□□□□□ -0.32
LIG3-209ENST00000586435 SIT1Q9Y3P8 196 aa13.07□□□□□ -0.32
LIG3-209ENST00000586435 ADAM12O43184 909 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 NEFLP07196 543 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 GUCY1B3Q02153 619 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 ZNF174Q15697 407 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 UPP1Q16831 310 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 TTC38Q5R3I4 469 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 ATF7IP2Q5U623 682 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 PARM1Q6UWI2 310 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 FBXO18Q8NFZ0 1043 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 PJA1Q8NG27 643 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 SLC7A14Q8TBB6 771 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 SHDQ96IW2 340 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 KIFC3Q9BVG8 833 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 BHMT2Q9H2M3 363 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 KCNH3Q9ULD8 1083 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 LIMCH1Q9UPQ0 1083 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 TNFSF13BQ9Y275 285 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 GDAQ9Y2T3 454 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 BACE2Q9Y5Z0 518 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 STK24Q9Y6E0 443 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 PHLPP2Q6ZVD8 1323 aa13.06□□□□□ -0.32
LIG3-209ENST00000586435 CACNA1AO00555 2505 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 CCL16O15467 120 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 TRAPPC3O43617 180 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 B3GAT3O94766 335 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 LMNAP02545 664 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 LIG1P18858 919 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 OR1D2P34982 312 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 CCT6AP40227 531 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 GRM5P41594 1212 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 CLCNKBP51801 687 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 GPC5P78333 572 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 NTHL1P78549 312 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 HMGN5P82970 282 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 ECM1Q16610 540 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 XKR4Q5GH76 650 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 GLRA4Q5JXX5 417 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 AXDND1Q5T1B0 1012 aaPredicted RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 NT5DC1Q5TFE4 455 aa13.05□□□□□ -0.32
LIG3-209ENST00000586435 ZC3H14Q6PJT7 736 aaKnown RBP13.05□□□□□ -0.32
LIG3-209ENST00000586435 CD300LGQ6UXG3 332 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms