RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MAPK7Q13164 816 aa22.51■■□□□ 1.19
SHMT1-209ENST00000582653 LARP1BQ659C4 914 aaKnown RBP22.51■■□□□ 1.19
SHMT1-209ENST00000582653 GLYCTKQ8IVS8 523 aa22.51■■□□□ 1.19
SHMT1-209ENST00000582653 ZNF707Q96C28 371 aaPredicted RBP22.51■■□□□ 1.19
SHMT1-209ENST00000582653 ZDHHC7Q9NXF8 308 aa22.51■■□□□ 1.19
SHMT1-209ENST00000582653 DENND4AQ7Z401 1863 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 KMT2EQ8IZD2 1858 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 N4BP1O75113 896 aaKnown RBP22.5■■□□□ 1.19
SHMT1-209ENST00000582653 RPL17P18621 184 aaKnown RBP22.5■■□□□ 1.19
SHMT1-209ENST00000582653 CLCN5P51795 746 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 RAD51AP2Q09MP3 1159 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 DCAF4L1Q3SXM0 396 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 RTP2Q5QGT7 225 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 FAM171A1Q5VUB5 890 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 TAS1R3Q7RTX0 852 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 SMG7Q92540 1137 aaKnown RBP22.5■■□□□ 1.19
SHMT1-209ENST00000582653 TTPALQ9BTX7 342 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 PRKD2Q9BZL6 878 aa22.5■■□□□ 1.19
SHMT1-209ENST00000582653 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.5■■□□□ 1.19
SHMT1-209ENST00000582653 KIF4AO95239 1232 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 ELAVL2Q12926 359 aaKnown RBP22.49■■□□□ 1.19
SHMT1-209ENST00000582653 GLRA4Q5JXX5 417 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 HYIQ5T013 277 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 ASTLQ6HA08 431 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-209ENST00000582653 PRSS55Q6UWB4 352 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-209ENST00000582653 CEP120Q8N960 986 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 LNX1Q8TBB1 728 aaPredicted RBP22.49■■□□□ 1.19
SHMT1-209ENST00000582653 PIK3R5Q8WYR1 880 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 DRC1Q96MC2 740 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 ACO2Q99798 780 aaKnown RBP22.49■■□□□ 1.19
SHMT1-209ENST00000582653 CLSTN3Q9BQT9 956 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 PIDD1Q9HB75 910 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 KMT5AQ9NQR1 393 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 EPS15L1Q9UBC2 864 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 DUSP12Q9UNI6 340 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 TNFSF13BQ9Y275 285 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 ZDBF2Q9HCK1 2354 aa22.49■■□□□ 1.19
SHMT1-209ENST00000582653 PLXNA3P51805 1871 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 SLC16A4O15374 487 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 GALR2O43603 387 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 IGFBP6P24592 240 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 GBP2P32456 591 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 DMP1Q13316 513 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 APBB1IPQ7Z5R6 666 aaPredicted RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 TMEM105Q8N8V8 129 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 NXPE3Q969Y0 559 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 TARS2Q9BW92 718 aaKnown RBP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 MFSD1Q9H3U5 465 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 TMEM134Q9H6X4 195 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.48■■□□□ 1.19
SHMT1-209ENST00000582653 C2orf16Q68DN1 1984 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 CLUHO75153 1309 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 PHLPP2Q6ZVD8 1323 aa22.48■■□□□ 1.19
SHMT1-209ENST00000582653 ZMYND10O75800 440 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 OSTNP61366 133 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 PDXDC1Q6P996 788 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 DCLRE1AQ6PJP8 1040 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 CEP57Q86XR8 500 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 SYT2Q8N9I0 419 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-209ENST00000582653 ATOH1Q92858 354 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-209ENST00000582653 CDT1Q9H211 546 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 PTPRHQ9HD43 1115 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 ARHGAP28Q9P2N2 729 aa22.47■■□□□ 1.19
SHMT1-209ENST00000582653 MTCL1Q9Y4B5 1905 aaKnown RBP22.47■■□□□ 1.19
SHMT1-209ENST00000582653 NPHP3-ACAD11A0A0J9YXS1 232 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 H0Y858 1186 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 GUCY2CP25092 1073 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 SLC12A3P55017 1021 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 ARL6IP4Q66PJ3 421 aaKnown RBP22.46■■□□□ 1.19
SHMT1-209ENST00000582653 CDK5RAP3Q96JB5 506 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 PPP1R10Q96QC0 940 aaKnown RBP22.46■■□□□ 1.19
SHMT1-209ENST00000582653 MYADMQ96S97 322 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 NTPCRQ9BSD7 190 aaKnown RBP22.46■■□□□ 1.19
SHMT1-209ENST00000582653 MRPL4Q9BYD3 311 aaKnown RBP22.46■■□□□ 1.19
SHMT1-209ENST00000582653 C17orf75Q9HAS0 396 aa22.46■■□□□ 1.19
SHMT1-209ENST00000582653 RBM19Q9Y4C8 960 aaKnown RBP22.46■■□□□ 1.19
SHMT1-209ENST00000582653 TMEM189-UBE2V1I3L0A0 370 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 PLA2G4BP0C869 781 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 LAMP2P13473 410 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 CACNB1Q02641 598 aaPredicted RBP22.45■■□□□ 1.18
SHMT1-209ENST00000582653 PSMD5Q16401 504 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 ZNF568Q3ZCX4 644 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 ALKAL1Q6UXT8 129 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 SLC44A3Q8N4M1 653 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 KCTD17Q8N5Z5 321 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 RSAD2Q8WXG1 361 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 ZBTB45Q96K62 511 aaPredicted RBP22.45■■□□□ 1.18
SHMT1-209ENST00000582653 GOLGA2P5Q9HBQ8 144 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 WNT16Q9UBV4 365 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 KCNG1Q9UIX4 513 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 FBXW11Q9UKB1 542 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 USP34Q70CQ2 3546 aa22.45■■□□□ 1.18
SHMT1-209ENST00000582653 B3GAT3O94766 335 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 NPR3P17342 541 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 GRM5P41594 1212 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 CLCNKBP51801 687 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 GRIN1Q05586 938 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 TMEM119Q4V9L6 283 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 XKR4Q5GH76 650 aa22.44■■□□□ 1.18
SHMT1-209ENST00000582653 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms