RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	KCNE1	P15382	129 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	NASP	P49321	788 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	MCL1	Q07820	350 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	KARS	Q15046	597 aa	Known RBP	13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ATAT1	Q5SQI0	421 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	DCLRE1A	Q6PJP8	1040 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	HAUS6	Q7Z4H7	955 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	AUTS2	Q8WXX7	1259 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.79	□□□□□ -0.2	7e-8	■■□□□ 13.1
CDK5RAP3-222	ENST00000581708	ZNF396	Q96N95	335 aa	Predicted RBP	13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ACAP3	Q96P50	834 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	REEP2	Q9BRK0	252 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GPR62	Q9BZJ7	368 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ST6GALNAC4	Q9H4F1	302 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	PLEKHA4	Q9H4M7	779 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	PLEKHA5	Q9HAU0	1116 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	UST	Q9Y2C2	406 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GDA	Q9Y2T3	454 aa		13.79	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	SMIM28	A0A1B0GU29	152 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	PRR33	A8MZF0	331 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ABLIM1	O14639	778 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TEX28	O15482	410 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	CLDN3	O15551	220 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TBCA	O75347	108 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	FAM13A	O94988	1023 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GLUD1	P00367	558 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	PIGR	P01833	764 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	KRT18	P05783	430 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	EPCAM	P16422	314 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GRIN1	Q05586	938 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	RAD51AP2	Q09MP3	1159 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	CCDC73	Q6ZRK6	1079 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	RTL10	Q7L3V2	364 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TAS1R1	Q7RTX1	841 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	RNF135	Q8IUD6	432 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	KRI1	Q8N9T8	703 aa	Known RBP	13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	PIK3R5	Q8WYR1	880 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TTPAL	Q9BTX7	342 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	CNTN3	Q9P232	1028 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	SEL1L	Q9UBV2	794 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	USP20	Q9Y2K6	914 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	GTF3C3	Q9Y5Q9	886 aa		13.78	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TRIO	O75962	3097 aa		13.77	□□□□□ -0.2
CDK5RAP3-222	ENST00000581708	TRAK2	O60296	914 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	KIF4A	O95239	1232 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	HSP90AA1	P07900	732 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	MARCKS	P29966	332 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	RPL9	P32969	192 aa	Known RBP	13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	MCM6	Q14566	821 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	RRAGB	Q5VZM2	374 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	ATL3	Q6DD88	541 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	GPR149	Q86SP6	731 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	PLCD3	Q8N3E9	789 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	MYCT1	Q8N699	235 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	HVCN1	Q96D96	273 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	EPSTI1	Q96J88	318 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	SNX27	Q96L92	541 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	USP28	Q96RU2	1077 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	TBX20	Q9UMR3	447 aa		13.77	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	CASTOR2	A6NHX0	329 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	C2CD2L	O14523	706 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	PPP6R2	O75170	966 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	B3GAT3	O94766	335 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	YEATS4	O95619	227 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	CLTA	P09496	248 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	GTF2B	Q00403	316 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	POU5F1	Q01860	360 aa	Known RBP	13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	UPP1	Q16831	310 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	RARS2	Q5T160	578 aa	Known RBP	13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	LILRA6	Q6PI73	481 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	SV2B	Q7L1I2	683 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	LRRC15	Q8TF66	581 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	RIN2	Q8WYP3	895 aa	Predicted RBP	13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	EDA	Q92838	391 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	RPGRIP1	Q96KN7	1286 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	LRFN3	Q9BTN0	628 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	ZDHHC7	Q9NXF8	308 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	CIT	O14578	2027 aa		13.76	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	SPDYE4	A6NLX3	237 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708		F8W810	466 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708		K7ENM7	598 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	HNRNPDL	O14979	420 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	GAP43	P17677	238 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	FGFR3	P22607	806 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	PAX3	P23760	479 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	LIG4	P49917	911 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	DHX8	Q14562	1220 aa	Known RBP	13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	STK38	Q15208	465 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	FAM171A1	Q5VUB5	890 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	SLFN12L	Q6IEE8	588 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	FAM173B	Q6P4H8	233 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	ZBTB33	Q86T24	672 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	MAP4K3	Q8IVH8	894 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	CD302	Q8IX05	232 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	ZDHHC14	Q8IZN3	488 aa		13.75	□□□□□ -0.21
CDK5RAP3-222	ENST00000581708	CEP120	Q8N960	986 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms