RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MSTO1Q9BUK6 570 aa21.29■■□□□ 1
SS18-209ENST00000578595 MAGEF1Q9HAY2 307 aa21.29■■□□□ 1
SS18-209ENST00000578595 PLXNA3P51805 1871 aa21.28■■□□□ 1
SS18-209ENST00000578595 VWA8A3KMH1 1905 aa21.28■■□□□ 1
SS18-209ENST00000578595 TTC28Q96AY4 2481 aa21.28■■□□□ 1
SS18-209ENST00000578595 A0A1B0GVL5 298 aa21.28■■□□□ 1
SS18-209ENST00000578595 FSD2A1L4K1 749 aa21.28■■□□□ 1
SS18-209ENST00000578595 ABLIM1O14639 778 aa21.28■■□□□ 1
SS18-209ENST00000578595 CTSAP10619 480 aa21.28■■□□□ 1
SS18-209ENST00000578595 PFKFB1P16118 471 aa21.28■■□□□ 1
SS18-209ENST00000578595 ANP32AP39687 249 aaKnown RBP21.28■■□□□ 1
SS18-209ENST00000578595 MCL1Q07820 350 aa21.28■■□□□ 1
SS18-209ENST00000578595 COASYQ13057 564 aa21.28■■□□□ 1
SS18-209ENST00000578595 DUSP6Q16828 381 aa21.28■■□□□ 1
SS18-209ENST00000578595 HVCN1Q96D96 273 aa21.28■■□□□ 1
SS18-209ENST00000578595 FAM212AQ96EL1 285 aa21.28■■□□□ 1
SS18-209ENST00000578595 SNX27Q96L92 541 aa21.28■■□□□ 1
SS18-209ENST00000578595 VN1R3Q9BXE9 311 aa21.28■■□□□ 1
SS18-209ENST00000578595 TRIM9Q9C026 710 aa21.28■■□□□ 1
SS18-209ENST00000578595 BLZF1Q9H2G9 400 aa21.28■■□□□ 1
SS18-209ENST00000578595 KBTBD4Q9NVX7 518 aa21.28■■□□□ 1
SS18-209ENST00000578595 STK39Q9UEW8 545 aa21.28■■□□□ 1
SS18-209ENST00000578595 SERTAD1Q9UHV2 236 aa21.28■■□□□ 1
SS18-209ENST00000578595 ADAM28Q9UKQ2 775 aa21.28■■□□□ 1
SS18-209ENST00000578595 BARX2Q9UMQ3 279 aaPredicted RBP21.28■■□□□ 1
SS18-209ENST00000578595 EXOC7Q9UPT5 735 aa21.28■■□□□ 1
SS18-209ENST00000578595 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.27■■□□□ 1
SS18-209ENST00000578595 C2orf71A6NGG8 1288 aa21.27■■□□□ 1
SS18-209ENST00000578595 SPDYE4A6NLX3 237 aa21.27■■□□□ 1
SS18-209ENST00000578595 TBX10O75333 385 aa21.27■■□□□ 1
SS18-209ENST00000578595 SOD2P04179 222 aa21.27■■□□□ 1
SS18-209ENST00000578595 CXCL8P10145 99 aa21.27■■□□□ 1
SS18-209ENST00000578595 MYBP10242 640 aa21.27■■□□□ 1
SS18-209ENST00000578595 GLUD2P49448 558 aa21.27■■□□□ 1
SS18-209ENST00000578595 ADALQ6DHV7 355 aa21.27■■□□□ 1
SS18-209ENST00000578595 FUT10Q6P4F1 479 aa21.27■■□□□ 1
SS18-209ENST00000578595 ZNF720Q7Z2F6 126 aa21.27■■□□□ 1
SS18-209ENST00000578595 MRPL43Q8N983 215 aaKnown RBP21.27■■□□□ 1
SS18-209ENST00000578595 NOC3LQ8WTT2 800 aaKnown RBP21.27■■□□□ 1
SS18-209ENST00000578595 ACCSQ96QU6 501 aa21.27■■□□□ 1
SS18-209ENST00000578595 PAAF1Q9BRP4 392 aa21.27■■□□□ 1
SS18-209ENST00000578595 HERC2P3Q9BVR0 1158 aa21.27■■□□□ 1
SS18-209ENST00000578595 ST6GALNAC4Q9H4F1 302 aa21.27■■□□□ 1
SS18-209ENST00000578595 GOLGA2P5Q9HBQ8 144 aa21.27■■□□□ 1
SS18-209ENST00000578595 MRPL17Q9NRX2 175 aaKnown RBP21.27■■□□□ 1
SS18-209ENST00000578595 SLC38A7Q9NVC3 462 aa21.27■■□□□ 1
SS18-209ENST00000578595 PCDHB13Q9Y5F0 798 aa21.27■■□□□ 1
SS18-209ENST00000578595 SMIM28A0A1B0GU29 152 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 GOLGA6L4A6NEF3 574 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 TISP43B9A030 160 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 OGTO15294 1046 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 KIF4AO95239 1232 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 PIGRP01833 764 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 CASP1P29466 404 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 TNFSF9P41273 254 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 RBM10P98175 930 aaKnown RBP21.26■□□□□ 0.99
SS18-209ENST00000578595 PPP2R3AQ06190 1150 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 DLX2Q07687 328 aaPredicted RBP21.26■□□□□ 0.99
SS18-209ENST00000578595 ADAM15Q13444 863 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 LEXMQ3ZCV2 418 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 PTCRAQ6ISU1 281 aaPredicted RBP21.26■□□□□ 0.99
SS18-209ENST00000578595 STXBP4Q6ZWJ1 553 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 GRAMD1CQ8IYS0 662 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 FSIP1Q8NA03 581 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 ADAMTS19Q8TE59 1207 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 POMGNT1Q8WZA1 660 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 PPP1R10Q96QC0 940 aaKnown RBP21.26■□□□□ 0.99
SS18-209ENST00000578595 HAPLN2Q9GZV7 340 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 RPF1Q9H9Y2 349 aaKnown RBP21.26■□□□□ 0.99
SS18-209ENST00000578595 OLFML3Q9NRN5 406 aa21.26■□□□□ 0.99
SS18-209ENST00000578595 SF3B1O75533 1304 aaKnown RBP eCLIP21.26■□□□□ 0.99
SS18-209ENST00000578595 ANKRD63C9JTQ0 380 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 DLL1O00548 723 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 CLTAP09496 248 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 CMA1P23946 247 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 CASP5P51878 434 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 SPAG1Q07617 926 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 ALCAMQ13740 583 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 PTPN14Q15678 1187 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 L1TD1Q5T7N2 865 aaKnown RBP21.25■□□□□ 0.99
SS18-209ENST00000578595 SLFN12LQ6IEE8 588 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 CEP57Q86XR8 500 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 HPS3Q969F9 1004 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 B3GALT6Q96L58 329 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 COL25A1Q9BXS0 654 aaPredicted RBP21.25■□□□□ 0.99
SS18-209ENST00000578595 EMILIN2Q9BXX0 1053 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 IKZF4Q9H2S9 585 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 CD207Q9UJ71 328 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 FAM50BQ9Y247 325 aa21.25■□□□□ 0.99
SS18-209ENST00000578595 MTCL1Q9Y4B5 1905 aaKnown RBP21.24■□□□□ 0.99
SS18-209ENST00000578595 FRMD3A2A2Y4 597 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 PRPF6O94906 941 aaKnown RBP21.24■□□□□ 0.99
SS18-209ENST00000578595 GLP2RO95838 553 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 KLRC2P26717 231 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 LTBRP36941 435 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 SYKP43405 635 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 CLCNKBP51801 687 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 KCNA1Q09470 495 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 KYAT1Q16773 422 aa21.24■□□□□ 0.99
SS18-209ENST00000578595 CTC1Q2NKJ3 1217 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms