RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 ZNF516Q92618 1163 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 FAM212AQ96EL1 285 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 ACAP3Q96P50 834 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 CCDC94Q9BW85 323 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-209ENST00000573474 GANQ9H2C0 597 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 KCNF1Q9H3M0 494 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 TOPORSQ9NS56 1045 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-209ENST00000573474 CEP72Q9P209 647 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 FBXL5Q9UKA1 691 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 COQ4Q9Y3A0 265 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 DAAM1Q9Y4D1 1078 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.82□□□□□ -0.04
CCDC40-209ENST00000573474 MROH7Q68CQ1 1323 aa14.82□□□□□ -0.04
CCDC40-209ENST00000573474 EPHB6O15197 1021 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 TLR3O15455 904 aaKnown RBP14.81□□□□□ -0.04
CCDC40-209ENST00000573474 CD4P01730 458 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 C4BPAP04003 597 aaKnown RBP14.81□□□□□ -0.04
CCDC40-209ENST00000573474 CXCL8P10145 99 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 ACTN1P12814 892 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 POLR2FP61218 127 aaKnown RBP14.81□□□□□ -0.04
CCDC40-209ENST00000573474 LRMPQ12912 555 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 DUOXA2Q1HG44 320 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 ZACNQ401N2 412 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 UBXN11Q5T124 520 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 TRIM65Q6PJ69 517 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 SLC39A5Q6ZMH5 540 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 C15orf39Q6ZRI6 1047 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 CACNA2D4Q7Z3S7 1137 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 CD302Q8IX05 232 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 TMEM192Q8IY95 271 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 FBXL13Q8NEE6 735 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 LMO3Q8TAP4 145 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 DNAJC7Q99615 494 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 EIF2AQ9BY44 585 aaKnown RBP14.81□□□□□ -0.04
CCDC40-209ENST00000573474 TRIM6Q9C030 488 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-209ENST00000573474 TMX1Q9H3N1 280 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 ASB7Q9H672 318 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 SIX2Q9NPC8 291 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 ABHD10Q9NUJ1 306 aa14.81□□□□□ -0.04
CCDC40-209ENST00000573474 LACTBL1A8MY62 500 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 GHRP10912 638 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 SKILP12757 684 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 UCHL3P15374 230 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 CCZ1BP86790 482 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 CCZ1P86791 482 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 NFX1Q12986 1120 aaKnown RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 PAK2Q13177 524 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 BFSP2Q13515 415 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 LPIN1Q14693 890 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 SLC10A6Q3KNW5 377 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 LMBRD2Q68DH5 695 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 TWF2Q6IBS0 349 aaKnown RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 TRAF7Q6Q0C0 670 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 BAP1Q92560 729 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 BAG1Q99933 345 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 NAA15Q9BXJ9 866 aaKnown RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 NUCKS1Q9H1E3 243 aaKnown RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 AGO3Q9H9G7 860 aaKnown RBP14.8□□□□□ -0.04
CCDC40-209ENST00000573474 PLEKHA5Q9HAU0 1116 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 ERVK-5Q9HDB9 667 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 RAB20Q9NX57 234 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 PADI3Q9ULW8 664 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 ZKSCAN5Q9Y2L8 839 aa14.8□□□□□ -0.04
CCDC40-209ENST00000573474 CENPFP49454 3210 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 TNNC2P02585 160 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 COL6A1P12109 1028 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 SELPP16109 830 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 ZSCAN20P17040 1043 aaPredicted RBP14.79□□□□□ -0.04
CCDC40-209ENST00000573474 RFX1P22670 979 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 CD52P31358 61 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 YARSP54577 528 aaKnown RBP14.79□□□□□ -0.04
CCDC40-209ENST00000573474 APBA1Q02410 837 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 PTPRJQ12913 1337 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 BIRC3Q13489 604 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 C1orf53Q5VUE5 145 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 TDRD10Q5VZ19 366 aaKnown RBP14.79□□□□□ -0.04
CCDC40-209ENST00000573474 PDXDC1Q6P996 788 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 RRAGAQ7L523 313 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 ANKRD33Q7Z3H0 272 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 OR5B17Q8NGF7 314 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 TAS1R2Q8TE23 839 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 SYN2Q92777 582 aaPredicted RBP14.79□□□□□ -0.04
CCDC40-209ENST00000573474 SEMA4DQ92854 862 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 ANKRD36BP1Q96IX9 119 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 TOX2Q96NM4 488 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 TMEM106CQ9BVX2 250 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 NLRC4Q9NPP4 1024 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 PRDM10Q9NQV6 1147 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 ZNHIT6Q9NWK9 470 aaKnown RBP14.79□□□□□ -0.04
CCDC40-209ENST00000573474 SNTG2Q9NY99 539 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 APEX2Q9UBZ4 518 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 MYO6Q9UM54 1294 aa14.79□□□□□ -0.04
CCDC40-209ENST00000573474 DCDC2CA8MYV0 355 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 MEFVO15553 781 aaPredicted RBP14.78□□□□□ -0.04
CCDC40-209ENST00000573474 PQBP1O60828 265 aaKnown RBP14.78□□□□□ -0.04
CCDC40-209ENST00000573474 ZC3H11AO75152 810 aaKnown RBP eCLIP14.78□□□□□ -0.04
CCDC40-209ENST00000573474 PHACTR2O75167 634 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 HLA-DRAP01903 254 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 TMEM191BP0C7N4 346 aa14.78□□□□□ -0.04
CCDC40-209ENST00000573474 FECHP22830 423 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms