RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TRIM6Q9C030 488 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 PLEKHA4Q9H4M7 779 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.43□□□□□ -1.22
VPS53-213ENST00000572334 PRMT7Q9NVM4 692 aaPredicted RBP7.43□□□□□ -1.22
VPS53-213ENST00000572334 IGSF9Q9P2J2 1179 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 PARP2Q9UGN5 583 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 FBXW11Q9UKB1 542 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 SSX2IPQ9Y2D8 614 aa7.43□□□□□ -1.22
VPS53-213ENST00000572334 ACKR2O00590 384 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 ABLIM1O14639 778 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 N4BP3O15049 544 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 PRKCBP05771 671 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 OR52Z1P0C646 297 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 LAMP2P13473 410 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 NAMPTP43490 491 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 NTHL1P78549 312 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 NCBP1Q09161 790 aaKnown RBP7.42□□□□□ -1.22
VPS53-213ENST00000572334 MAPK7Q13164 816 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 HTR4Q13639 388 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 TTC38Q5R3I4 469 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 FAM171A1Q5VUB5 890 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 CCDC105Q8IYK2 499 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 SIX5Q8N196 739 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 CEP120Q8N960 986 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 C3orf58Q8NDZ4 430 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 FBXO18Q8NFZ0 1043 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 PIK3R5Q8WYR1 880 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 PPP1R10Q96QC0 940 aaKnown RBP7.42□□□□□ -1.22
VPS53-213ENST00000572334 TTPALQ9BTX7 342 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 IRF2BPLQ9H1B7 796 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 FOXP1Q9H334 677 aaPredicted RBP7.42□□□□□ -1.22
VPS53-213ENST00000572334 PTPRHQ9HD43 1115 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 ZDHHC7Q9NXF8 308 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 DLGAP2Q9P1A6 1054 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 WNT16Q9UBV4 365 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 LIMCH1Q9UPQ0 1083 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 DENND4CQ5VZ89 1909 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 SCN1AP35498 2009 aa7.42□□□□□ -1.22
VPS53-213ENST00000572334 TICRRQ7Z2Z1 1910 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 SPDYE4A6NLX3 237 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 PP2D1A8MPX8 630 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 TMEM189-UBE2V1I3L0A0 370 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 NRG2O14511 850 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 NR1I2O75469 434 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 TADA2AO75478 443 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 THP07101 528 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 CFHP08603 1231 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 SRFP11831 508 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GLULP15104 373 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 MUTP22033 750 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 FGFR3P22607 806 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 U2AF2P26368 475 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-213ENST00000572334 GBP2P32456 591 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 SOX4Q06945 474 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 ORC2Q13416 577 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 PRPF4BQ13523 1007 aaKnown RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 TRIM29Q14134 588 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 MAPK6Q16659 721 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 UPP1Q16831 310 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 XKR4Q5GH76 650 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GLRA4Q5JXX5 417 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 ALKAL1Q6UXT8 129 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GET4Q7L5D6 327 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 KCNK18Q7Z418 384 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GRASPQ7Z6J2 395 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 FRMD5Q7Z6J6 570 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 ZBTB8OSQ8IWT0 167 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 HACE1Q8IYU2 909 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 TMEM130Q8N3G9 435 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 IGSF22Q8N9C0 903 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 DTWD2Q8NBA8 298 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 ITFG1Q8TB96 612 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GPR152Q8TDT2 470 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 FGF14Q92915 247 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 C8orf76Q96K31 380 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 ZMAT2Q96NC0 199 aaKnown RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 LLPHQ9BRT6 129 aaKnown RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 MMTAG2Q9BU76 263 aaKnown RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 C2orf40Q9H1Z8 148 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 BHMT2Q9H2M3 363 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 MFSD1Q9H3U5 465 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GOLGA2P5Q9HBQ8 144 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 CA14Q9ULX7 337 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 GDAQ9Y2T3 454 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 PCDHB6Q9Y5E3 794 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 NUMBLQ9Y6R0 609 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 SF3B1O75533 1304 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-213ENST00000572334 TSC2P49815 1807 aa7.41□□□□□ -1.22
VPS53-213ENST00000572334 KIF26AQ9ULI4 1882 aaPredicted RBP7.41□□□□□ -1.22
VPS53-213ENST00000572334 ARHGEF35A5YM69 484 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 SHISA7A6NL88 538 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 E9PMD0 336 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 I3L4J1 428 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 TBC1D4O60343 1298 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 C8AP07357 584 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 POU2F2P09086 479 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 PROZP22891 400 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 CDC25AP30304 524 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 HOXA9P31269 272 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 RBM25P49756 843 aaKnown RBP7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms