RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GJD3Q8N144 294 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 PDILTQ8N807 584 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 KCNG4Q8TDN1 519 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 KLHL5Q96PQ7 755 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 PPP1R10Q96QC0 940 aaKnown RBP22.04■■□□□ 1.12
NUP88-204ENST00000572290 FIZ1Q96SL8 496 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 GPR62Q9BZJ7 368 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 USP15Q9Y4E8 981 aaPredicted RBP22.04■■□□□ 1.12
NUP88-204ENST00000572290 MYO7AQ13402 2215 aa22.04■■□□□ 1.12
NUP88-204ENST00000572290 SMIM28A0A1B0GU29 152 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 CNPP09543 421 aaKnown RBP22.03■■□□□ 1.12
NUP88-204ENST00000572290 KLRC2P26717 231 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 NMT1P30419 496 aaKnown RBP22.03■■□□□ 1.12
NUP88-204ENST00000572290 SSTR3P32745 418 aaPredicted RBP22.03■■□□□ 1.12
NUP88-204ENST00000572290 LIG4P49917 911 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 DSG1Q02413 1049 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 ZP2Q05996 745 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 USP41Q3LFD5 358 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 XKR4Q5GH76 650 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 KIAA0319Q5VV43 1072 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 SYCE2Q6PIF2 218 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 ALKAL1Q6UXT8 129 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 ADHFE1Q8IWW8 467 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 SNX27Q96L92 541 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 CD320Q9NPF0 282 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 CHST7Q9NS84 486 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 CFAP45Q9UL16 551 aa22.03■■□□□ 1.12
NUP88-204ENST00000572290 SF3B1O75533 1304 aaKnown RBP eCLIP22.03■■□□□ 1.129e-6■■■■■ 68.9
NUP88-204ENST00000572290 HNRNPDLO14979 420 aaKnown RBP22.02■■□□□ 1.12
NUP88-204ENST00000572290 KIF4AO95239 1232 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 PIGRP01833 764 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 EPCAMP16422 314 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 GTF2BQ00403 316 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 TPRNQ4KMQ1 711 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 SFR1Q86XK3 245 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 HASPINQ8TF76 798 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 SLC22A17Q8WUG5 538 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 DNAJC19Q96DA6 116 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 APOL5Q9BWW9 433 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 S1PR5Q9H228 398 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 ST6GALNAC4Q9H4F1 302 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 DZANK1Q9NVP4 752 aa22.02■■□□□ 1.12
NUP88-204ENST00000572290 GAP43P17677 238 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 DNM1Q05193 864 aaKnown RBP22.01■■□□□ 1.11
NUP88-204ENST00000572290 SEZ6Q53EL9 994 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 AXDND1Q5T1B0 1012 aaPredicted RBP22.01■■□□□ 1.11
NUP88-204ENST00000572290 SHC4Q6S5L8 630 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 MAP4K3Q8IVH8 894 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 GPR65Q8IYL9 337 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 SUSD6Q92537 303 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 UROC1Q96N76 676 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 POP1Q99575 1024 aaKnown RBP22.01■■□□□ 1.11
NUP88-204ENST00000572290 HAPLN2Q9GZV7 340 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 RXFP1Q9HBX9 757 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 SLC38A7Q9NVC3 462 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 CNTN3Q9P232 1028 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 SEL1LQ9UBV2 794 aa22.01■■□□□ 1.11
NUP88-204ENST00000572290 KCNE1P15382 129 aa22■■□□□ 1.11
NUP88-204ENST00000572290 ME1P48163 572 aa22■■□□□ 1.11
NUP88-204ENST00000572290 CLCN4P51793 760 aa22■■□□□ 1.11
NUP88-204ENST00000572290 CLCNKBP51801 687 aa22■■□□□ 1.11
NUP88-204ENST00000572290 ZC2HC1CQ53FD0 456 aaPredicted RBP22■■□□□ 1.11
NUP88-204ENST00000572290 ZNF720Q7Z2F6 126 aa22■■□□□ 1.11
NUP88-204ENST00000572290 B3GALT6Q96L58 329 aa22■■□□□ 1.11
NUP88-204ENST00000572290 ZMAT2Q96NC0 199 aaKnown RBP22■■□□□ 1.11
NUP88-204ENST00000572290 GOLGA2P5Q9HBQ8 144 aa22■■□□□ 1.11
NUP88-204ENST00000572290 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP22■■□□□ 1.11
NUP88-204ENST00000572290 C19orf67A6NJJ6 358 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 TMEM189-UBE2V1I3L0A0 370 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 TEX28O15482 410 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 ADH1AP07327 375 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 CLTAP09496 248 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 IDEP14735 1019 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 ELAVL2Q12926 359 aaKnown RBP21.99■■□□□ 1.11
NUP88-204ENST00000572290 KYAT1Q16773 422 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 SLC10A6Q3KNW5 377 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 DCLRE1AQ6PJP8 1040 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 RIN2Q8WYP3 895 aaPredicted RBP21.99■■□□□ 1.11
NUP88-204ENST00000572290 FBXL18Q96ME1 805 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 LRRC27Q9C0I9 530 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 CUEDC2Q9H467 287 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 MRPL44Q9H9J2 332 aaKnown RBP21.99■■□□□ 1.11
NUP88-204ENST00000572290 RCOR1Q9UKL0 485 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 PCDHA7Q9UN72 937 aa21.99■■□□□ 1.11
NUP88-204ENST00000572290 MEFVO15553 781 aaPredicted RBP21.98■■□□□ 1.11
NUP88-204ENST00000572290 B3GAT3O94766 335 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 ITIH3Q06033 890 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 SOX4Q06945 474 aaPredicted RBP21.98■■□□□ 1.11
NUP88-204ENST00000572290 BECN1Q14457 450 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 E2F4Q16254 413 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 UPP1Q16831 310 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 HERC4Q5GLZ8 1057 aaPredicted RBP21.98■■□□□ 1.11
NUP88-204ENST00000572290 RTP2Q5QGT7 225 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 FAM171A1Q5VUB5 890 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 CES5AQ6NT32 575 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 IQUBQ8NA54 791 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 STAMQ92783 540 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 DHX58Q96C10 678 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 HVCN1Q96D96 273 aa21.98■■□□□ 1.11
NUP88-204ENST00000572290 DDX27Q96GQ7 796 aaKnown RBP21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms