RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 FBXO18Q8NFZ0 1043 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 DEPTORQ8TB45 409 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 LNX1Q8TBB1 728 aaPredicted RBP16.46■□□□□ 0.23
CLN3-236ENST00000568558 CLSTN3Q9BQT9 956 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 KIFC3Q9BVG8 833 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 RIF1Q5UIP0 2472 aaKnown RBP16.45■□□□□ 0.22
CLN3-236ENST00000568558 FANCMQ8IYD8 2048 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 KRBA1A5PL33 1030 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 SRFP11831 508 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 FXR2P51116 673 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLN3-236ENST00000568558 ELAVL2Q12926 359 aaKnown RBP16.45■□□□□ 0.22
CLN3-236ENST00000568558 DCAF4L1Q3SXM0 396 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 CEP57Q86XR8 500 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 DTWD2Q8NBA8 298 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 BHMT2Q9H2M3 363 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 CA14Q9ULX7 337 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 GDAQ9Y2T3 454 aa16.45■□□□□ 0.22
CLN3-236ENST00000568558 ANHXE9PGG2 379 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 HNRNPA1P09651 372 aaKnown RBP eCLIP16.44■□□□□ 0.22
CLN3-236ENST00000568558 CCT6AP40227 531 aaKnown RBP16.44■□□□□ 0.22
CLN3-236ENST00000568558 TRAPPC10P48553 1259 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 RBM25P49756 843 aaKnown RBP16.44■□□□□ 0.22
CLN3-236ENST00000568558 EFNA5P52803 228 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 HTR4Q13639 388 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 NT5DC1Q5TFE4 455 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 LIN9Q5TKA1 542 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 PDXDC1Q6P996 788 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.44■□□□□ 0.22
CLN3-236ENST00000568558 FRMD5Q7Z6J6 570 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 C4orf32Q8N8J7 132 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 KIFAP3Q92845 792 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 IFT74Q96LB3 600 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 POLD4Q9HCU8 107 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 DAXXQ9UER7 740 aaPredicted RBP16.44■□□□□ 0.22
CLN3-236ENST00000568558 LRWD1Q9UFC0 647 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 ZFP37Q9Y6Q3 630 aaPredicted RBP16.44■□□□□ 0.22
CLN3-236ENST00000568558 SPTBN4Q9H254 2564 aa16.44■□□□□ 0.22
CLN3-236ENST00000568558 TMEM189-UBE2V1I3L0A0 370 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 ADAM12O43184 909 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 C8AP07357 584 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 FSHRP23945 695 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 HOXA9P31269 272 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 HMGN5P82970 282 aaKnown RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 GNL2Q13823 731 aaKnown RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 NBR1Q14596 966 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 ANGPT1Q15389 498 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 GLRA4Q5JXX5 417 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 PPM1LQ5SGD2 360 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 ATF7IP2Q5U623 682 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 GRASPQ7Z6J2 395 aaPredicted RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 GPR152Q8TDT2 470 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 NKD2Q969F2 451 aaPredicted RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 PPP1R10Q96QC0 940 aaKnown RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 NOL7Q9UMY1 257 aaKnown RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 KIAA1024Q9UPX6 916 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 NUMBLQ9Y6R0 609 aa16.43■□□□□ 0.22
CLN3-236ENST00000568558 PTPRZ1P23471 2315 aaPredicted RBP16.43■□□□□ 0.22
CLN3-236ENST00000568558 PATJQ8NI35 1801 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 STK25O00506 426 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 FGFR3P22607 806 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 IGFBP6P24592 240 aaPredicted RBP16.42■□□□□ 0.22
CLN3-236ENST00000568558 NTHL1P78549 312 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 RAB33AQ14088 237 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 PDIA5Q14554 519 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 IGSF22Q8N9C0 903 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 FAM184AQ8NB25 1140 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 SNX29Q8TEQ0 813 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 ZSCAN31Q96LW9 406 aaPredicted RBP16.42■□□□□ 0.22
CLN3-236ENST00000568558 TBC1D17Q9HA65 648 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 SLC2A4RGQ9NR83 387 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 DDX19AQ9NUU7 478 aaKnown RBP16.42■□□□□ 0.22
CLN3-236ENST00000568558 PHLPP2Q6ZVD8 1323 aa16.42■□□□□ 0.22
CLN3-236ENST00000568558 COL4A3Q01955 1670 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 K7ERI5 159 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 CCL16O15467 120 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 POU2F2P09086 479 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 RFX1P22670 979 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 OR1D2P34982 312 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 CLCNKBP51801 687 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 PHLDB3Q6NSJ2 640 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 DCLRE1AQ6PJP8 1040 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 CD300LGQ6UXG3 332 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 APBB1IPQ7Z5R6 666 aaPredicted RBP16.41■□□□□ 0.22
CLN3-236ENST00000568558 CEP120Q8N960 986 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 ST13P5Q8NFI4 369 aaPredicted RBP16.41■□□□□ 0.22
CLN3-236ENST00000568558 SLC7A14Q8TBB6 771 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 FGF14Q92915 247 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 UROC1Q96N76 676 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 GOLGA2P5Q9HBQ8 144 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 ARHGEF3Q9NR81 526 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 SH2B1Q9NRF2 756 aaPredicted RBP16.41■□□□□ 0.22
CLN3-236ENST00000568558 MTRRQ9UBK8 725 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 CDH7Q9ULB5 785 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 TNFSF13BQ9Y275 285 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 STK24Q9Y6E0 443 aa16.41■□□□□ 0.22
CLN3-236ENST00000568558 XYLBO75191 536 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 B3GAT3O94766 335 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 U2AF2P26368 475 aaKnown RBP eCLIP16.4■□□□□ 0.22
CLN3-236ENST00000568558 GRM5P41594 1212 aa16.4■□□□□ 0.22
CLN3-236ENST00000568558 TOB1P50616 345 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms