RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 PROS1P07225 676 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 RHOP08100 348 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 CEBPBP17676 345 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 NLRP5P59047 1200 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 PTENP60484 403 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 SHC2P98077 582 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 EMC2Q15006 297 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 PCBP1Q15365 356 aaKnown RBP eCLIP17.99■□□□□ 0.47
CLK3-223ENST00000568488 SLC5A9Q2M3M2 681 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 CEP68Q76N32 757 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 ESYT1Q9BSJ8 1104 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 RALGAPA1Q6GYQ0 2036 aa17.99■□□□□ 0.47
CLK3-223ENST00000568488 FAM208BQ5VWN6 2430 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 POU2F2P09086 479 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 ARF4P18085 180 aaPredicted RBP17.98■□□□□ 0.47
CLK3-223ENST00000568488 RCAN1P53805 252 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 TUSC3Q13454 348 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 RAB33AQ14088 237 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 ACAP1Q15027 740 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 SF3A2Q15428 464 aaKnown RBP17.98■□□□□ 0.47
CLK3-223ENST00000568488 XKR9Q5GH70 373 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 PDXDC1Q6P996 788 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 POTEHQ6S545 545 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 C12orf50Q8NA57 414 aaPredicted RBP17.98■□□□□ 0.47
CLK3-223ENST00000568488 ETNPPLQ8TBG4 499 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 IRF7Q92985 503 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 MTRQ99707 1265 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 ZFP14Q9HCL3 533 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 WRAP73Q9P2S5 460 aaPredicted RBP17.98■□□□□ 0.47
CLK3-223ENST00000568488 PPME1Q9Y570 386 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 PIAS3Q9Y6X2 628 aa17.98■□□□□ 0.47
CLK3-223ENST00000568488 CYP3A7-CYP3A51PA0A087WV96 503 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 AXIN1O15169 862 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 P4HBP07237 508 aaKnown RBP17.97■□□□□ 0.47
CLK3-223ENST00000568488 PTPN2P17706 415 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 CYP3A7P24462 503 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 GDI1P31150 447 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 CNR2P34972 360 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 TFDP1Q14186 410 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 CCDC6Q16204 474 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 ADCK5Q3MIX3 580 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 SLC27A1Q6PCB7 646 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 OTUD6AQ7L8S5 288 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 LONP2Q86WA8 852 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 FAM160A2Q8N612 972 aaPredicted RBP17.97■□□□□ 0.47
CLK3-223ENST00000568488 SLC26A6Q9BXS9 759 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 C22orf23Q9BZE7 217 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 ZNF334Q9HCZ1 680 aaPredicted RBP17.97■□□□□ 0.47
CLK3-223ENST00000568488 CDY1Q9Y6F8 540 aa17.97■□□□□ 0.47
CLK3-223ENST00000568488 FRYQ5TBA9 3013 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 NOTCH4Q99466 2003 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 CNOT1A5YKK6 2376 aaKnown RBP17.96■□□□□ 0.47
CLK3-223ENST00000568488 B4GALT5O43286 388 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 CHRNB1P11230 501 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 CCNE1P24864 410 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 YWHABP31946 246 aaKnown RBP17.96■□□□□ 0.47
CLK3-223ENST00000568488 MBTD1Q05BQ5 628 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 ELAVL2Q12926 359 aaKnown RBP17.96■□□□□ 0.47
CLK3-223ENST00000568488 GAS6Q14393 721 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 MXD4Q14582 209 aaPredicted RBP17.96■□□□□ 0.47
CLK3-223ENST00000568488 AMHR2Q16671 573 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 FAM78AQ5JUQ0 283 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 CORO1BQ9BR76 489 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 ARRDC1-AS1Q9H2J1 176 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 DDX25Q9UHL0 483 aaKnown RBP17.96■□□□□ 0.47
CLK3-223ENST00000568488 ZMIZ1Q9ULJ6 1067 aa17.96■□□□□ 0.47
CLK3-223ENST00000568488 C1QTNF9BB2RNN3 333 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 ZBTB39O15060 712 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 LRG1P02750 347 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 C1QTNF9P0C862 333 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 FCARP24071 287 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 RTL10Q7L3V2 364 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 SPEM1Q8N4L4 309 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 TCEAL4Q96EI5 215 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 RXFP3Q9NSD7 469 aa17.95■□□□□ 0.46
CLK3-223ENST00000568488 TM4SF5O14894 197 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 THP07101 528 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 ELF1P32519 619 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 LIMK1P53667 647 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.94■□□□□ 0.46
CLK3-223ENST00000568488 C4orf19Q8IY42 314 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 ASAP3Q8TDY4 903 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 LXNQ9BS40 222 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 RBM12Q9NTZ6 932 aaKnown RBP17.94■□□□□ 0.46
CLK3-223ENST00000568488 RGL1Q9NZL6 768 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 MTRRQ9UBK8 725 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 F5P12259 2224 aa17.94■□□□□ 0.46
CLK3-223ENST00000568488 NRG2O14511 850 aaPredicted RBP17.93■□□□□ 0.46
CLK3-223ENST00000568488 ZNF263O14978 683 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 KCNK5O95279 499 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 CPA1P15085 419 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 PSMC3P17980 439 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 PPP2R5CQ13362 524 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 CAPSQ13938 189 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 STPG1Q5TH74 334 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 VITQ6UXI7 678 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 Q6ZUG5 572 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 IFNLR1Q8IU57 520 aaPredicted RBP17.93■□□□□ 0.46
CLK3-223ENST00000568488 MAP4K3Q8IVH8 894 aa17.93■□□□□ 0.46
CLK3-223ENST00000568488 RASEFQ8IZ41 740 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms