RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 NPTX2P47972 431 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 ASTLQ6HA08 431 aaPredicted RBP17.69■□□□□ 0.42
CLN3-229ENST00000567963 DTHD1Q6ZMT9 781 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 MFSD1Q9H3U5 465 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.69■□□□□ 0.42
CLN3-229ENST00000567963 EPS15L1Q9UBC2 864 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 TNFSF13BQ9Y275 285 aa17.69■□□□□ 0.42
CLN3-229ENST00000567963 DMDP11532 3685 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 TRIP11Q15643 1979 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 GALR2O43603 387 aaPredicted RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 HIP1RO75146 1068 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 ZMYND10O75800 440 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 CLCN5P51795 746 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 PEX3P56589 373 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 ELAVL2Q12926 359 aaKnown RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 RABEP1Q15276 862 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 PSMD5Q16401 504 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 RINT1Q6NUQ1 792 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 APBB1IPQ7Z5R6 666 aaPredicted RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 DAW1Q8N136 415 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 PPP1R10Q96QC0 940 aaKnown RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 MYADMQ96S97 322 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 ACO2Q99798 780 aaKnown RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 MMTAG2Q9BU76 263 aaKnown RBP17.68■□□□□ 0.42
CLN3-229ENST00000567963 TMEM134Q9H6X4 195 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.68■□□□□ 0.42
CLN3-229ENST00000567963 KIF3AQ9Y496 699 aa17.68■□□□□ 0.42
CLN3-229ENST00000567963 H0Y858 1186 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 ST18O60284 1047 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 DMP1Q13316 513 aaPredicted RBP17.67■□□□□ 0.42
CLN3-229ENST00000567963 GLRA4Q5JXX5 417 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 PDXDC1Q6P996 788 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 C1orf186Q6ZWK4 172 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 RSAD2Q8WXG1 361 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 ATOH1Q92858 354 aaPredicted RBP17.67■□□□□ 0.42
CLN3-229ENST00000567963 PTPRHQ9HD43 1115 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 ARHGAP28Q9P2N2 729 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 FBXW11Q9UKB1 542 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 VWA8A3KMH1 1905 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 DOCK8Q8NF50 2099 aa17.67■□□□□ 0.42
CLN3-229ENST00000567963 TMEM189-UBE2V1I3L0A0 370 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 B3GAT3O94766 335 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 IGFBP6P24592 240 aaPredicted RBP17.66■□□□□ 0.42
CLN3-229ENST00000567963 CLCNKBP51801 687 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 MAPK7Q13164 816 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 RILPL1Q5EBL4 403 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 MCTP1Q6DN14 999 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 DCLRE1AQ6PJP8 1040 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 ALKAL1Q6UXT8 129 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.66■□□□□ 0.42
CLN3-229ENST00000567963 TAS1R3Q7RTX0 852 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 KCNK18Q7Z418 384 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 SLC44A3Q8N4M1 653 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 NXPE3Q969Y0 559 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 DRC1Q96MC2 740 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 RUSC1Q9BVN2 902 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 MRPL4Q9BYD3 311 aaKnown RBP17.66■□□□□ 0.42
CLN3-229ENST00000567963 C17orf75Q9HAS0 396 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 FAM86C1Q9NVL1 165 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 RBM19Q9Y4C8 960 aaKnown RBP17.66■□□□□ 0.42
CLN3-229ENST00000567963 PHLPP2Q6ZVD8 1323 aa17.66■□□□□ 0.42
CLN3-229ENST00000567963 SMIM28A0A1B0GU29 152 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 ADAM12O43184 909 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 NARSO43776 548 aaKnown RBP17.65■□□□□ 0.42
CLN3-229ENST00000567963 LAMP2P13473 410 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 NPR3P17342 541 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 FGFR3P22607 806 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 GRM5P41594 1212 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 ATP2C1P98194 919 aaPredicted RBP17.65■□□□□ 0.42
CLN3-229ENST00000567963 UPP1Q16831 310 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 XKR4Q5GH76 650 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 CWF19L1Q69YN2 538 aaKnown RBP17.65■□□□□ 0.42
CLN3-229ENST00000567963 CD300LGQ6UXG3 332 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 CEP120Q8N960 986 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 FLCNQ8NFG4 579 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 UROC1Q96N76 676 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 NTPCRQ9BSD7 190 aaKnown RBP17.65■□□□□ 0.42
CLN3-229ENST00000567963 CDT1Q9H211 546 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 KMT5AQ9NQR1 393 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 TOPORSQ9NS56 1045 aaPredicted RBP17.65■□□□□ 0.42
CLN3-229ENST00000567963 FBXL21Q9UKT6 434 aa17.65■□□□□ 0.42
CLN3-229ENST00000567963 DOCK6Q96HP0 2047 aa17.64■□□□□ 0.42
CLN3-229ENST00000567963 SFI1A8K8P3 1242 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 HNRNPA1P09651 372 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLN3-229ENST00000567963 YARSP54577 528 aaKnown RBP17.64■□□□□ 0.41
CLN3-229ENST00000567963 ZNF568Q3ZCX4 644 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 HYIQ5T013 277 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 GET4Q7L5D6 327 aaPredicted RBP17.64■□□□□ 0.41
CLN3-229ENST00000567963 TMX3Q96JJ7 454 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 TIPINQ9BVW5 301 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 CCDC94Q9BW85 323 aaPredicted RBP17.64■□□□□ 0.41
CLN3-229ENST00000567963 TARS2Q9BW92 718 aaKnown RBP17.64■□□□□ 0.41
CLN3-229ENST00000567963 GOLGA2P5Q9HBQ8 144 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 WNT16Q9UBV4 365 aa17.64■□□□□ 0.41
CLN3-229ENST00000567963 PI15O43692 258 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 CACNA1HO95180 2353 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 C8AP07357 584 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 AOC1P19801 751 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 PROZP22891 400 aa17.63■□□□□ 0.41
CLN3-229ENST00000567963 GUCY2CP25092 1073 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms