RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.65□□□□□ -0.06
CLK3-216ENST00000564468 KHSRPQ92945 711 aaKnown RBP eCLIP14.65□□□□□ -0.06
CLK3-216ENST00000564468 HVCN1Q96D96 273 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 UROC1Q96N76 676 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 EMILIN2Q9BXX0 1053 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 KCNH6Q9H252 994 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 MRPL17Q9NRX2 175 aaKnown RBP14.65□□□□□ -0.06
CLK3-216ENST00000564468 SLC38A7Q9NVC3 462 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 ANKFY1Q9P2R3 1169 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 CD207Q9UJ71 328 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 ADAM28Q9UKQ2 775 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 PCDHA7Q9UN72 937 aa14.65□□□□□ -0.06
CLK3-216ENST00000564468 A0A087X0B3 334 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 PTGESO14684 152 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 LINC01565O15544 149 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 URODP06132 367 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 HARSP12081 509 aaKnown RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 IDEP14735 1019 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 ALCAMQ13740 583 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 HSP90AA2PQ14568 343 aaPredicted RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 AXDND1Q5T1B0 1012 aaPredicted RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 KIAA1841Q6NSI8 718 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 SHC4Q6S5L8 630 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 TMEM184AQ6ZMB5 413 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 CCDC65Q8IXS2 484 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 GPR65Q8IYL9 337 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 BCL7CQ8WUZ0 217 aaPredicted RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 CASP10Q92851 521 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 DHX58Q96C10 678 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 DNAJC19Q96DA6 116 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 ZBTB45Q96K62 511 aaPredicted RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 SPATA32Q96LK8 384 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 HERC2P3Q9BVR0 1158 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 MRPL44Q9H9J2 332 aaKnown RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 MARCH5Q9NX47 278 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 EXOC7Q9UPT5 735 aa14.64□□□□□ -0.07
CLK3-216ENST00000564468 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.64□□□□□ -0.07
CLK3-216ENST00000564468 GRXCR2A6NFK2 248 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 ABLIM1O14639 778 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 TBX10O75333 385 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 HOXB8P17481 243 aaPredicted RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 NMT1P30419 496 aaKnown RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 OSTNP61366 133 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 NUCB2P80303 420 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 ELAVL2Q12926 359 aaKnown RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 COASYQ13057 564 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 SMAD4Q13485 552 aaKnown RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 USP41Q3LFD5 358 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 XKR4Q5GH76 650 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 HERC4Q5GLZ8 1057 aaPredicted RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 SLFN12LQ6IEE8 588 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 FUT10Q6P4F1 479 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 ALKAL1Q6UXT8 129 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 STXBP4Q6ZWJ1 553 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 ZNF720Q7Z2F6 126 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 SFR1Q86XK3 245 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 MAP4K3Q8IVH8 894 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 CEP120Q8N960 986 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 MSLNLQ96KJ4 702 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 PPP1R10Q96QC0 940 aaKnown RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 FIZ1Q96SL8 496 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 SCAND2PQ9GZW5 306 aaPredicted RBP14.63□□□□□ -0.07
CLK3-216ENST00000564468 PLEKHA5Q9HAU0 1116 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 CD320Q9NPF0 282 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 OLFML3Q9NRN5 406 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 PANK4Q9NVE7 773 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 KBTBD4Q9NVX7 518 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 PCDHB13Q9Y5F0 798 aa14.63□□□□□ -0.07
CLK3-216ENST00000564468 SF3B1O75533 1304 aaKnown RBP eCLIP14.63□□□□□ -0.07
CLK3-216ENST00000564468 SMIM28A0A1B0GU29 152 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 CASTOR2A6NHX0 329 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 OGTO15294 1046 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 POLR2DO15514 142 aaKnown RBP14.62□□□□□ -0.07
CLK3-216ENST00000564468 CLASP2O75122 1294 aaKnown RBP14.62□□□□□ -0.07
CLK3-216ENST00000564468 GLP2RO95838 553 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 CLTAP09496 248 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 KCNE1P15382 129 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 GLUD2P49448 558 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 CREMQ03060 361 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 DLX2Q07687 328 aaPredicted RBP14.62□□□□□ -0.07
CLK3-216ENST00000564468 POSTNQ15063 836 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 PTPN14Q15678 1187 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 E2F4Q16254 413 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 TPRNQ4KMQ1 711 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 RESP18Q5W5W9 173 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 RNF168Q8IYW5 571 aaPredicted RBP14.62□□□□□ -0.07
CLK3-216ENST00000564468 DDX27Q96GQ7 796 aaKnown RBP14.62□□□□□ -0.07
CLK3-216ENST00000564468 SNX27Q96L92 541 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 TSPAN18Q96SJ8 248 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 VN1R3Q9BXE9 311 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.62□□□□□ -0.07
CLK3-216ENST00000564468 CNTN3Q9P232 1028 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 PRKAG3Q9UGI9 489 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 DPP7Q9UHL4 492 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 ZDHHC9Q9Y397 364 aa14.62□□□□□ -0.07
CLK3-216ENST00000564468 ANK1P16157 1881 aa14.61□□□□□ -0.07
CLK3-216ENST00000564468 VWA8A3KMH1 1905 aa14.61□□□□□ -0.07
CLK3-216ENST00000564468 FRMD3A2A2Y4 597 aa14.61□□□□□ -0.07
CLK3-216ENST00000564468 TMEM189-UBE2V1I3L0A0 370 aa14.61□□□□□ -0.07
CLK3-216ENST00000564468 MBTPS2O43462 519 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms