RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NPTXRO95502 500 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 TDGF1P13385 188 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 OR1D2P34982 312 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 CXCL12P48061 93 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PTENP60484 403 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 ELAVL2Q12926 359 aaKnown RBP8.14□□□□□ -1.11
VPS4A-203ENST00000564399 TUSC3Q13454 348 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 TFDP1Q14186 410 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 GRM2Q14416 872 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PCBP1Q15365 356 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS4A-203ENST00000564399 UVSSAQ2YD98 709 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 XKR9Q5GH70 373 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 N4BP2L1Q5TBK1 243 aaPredicted RBP8.14□□□□□ -1.11
VPS4A-203ENST00000564399 TANGO2Q6ICL3 276 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PDXDC1Q6P996 788 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 B3GNT9Q6UX72 402 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 CEP68Q76N32 757 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 OTUD6AQ7L8S5 288 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 CDR2LQ86X02 465 aaPredicted RBP8.14□□□□□ -1.11
VPS4A-203ENST00000564399 GSTCDQ8NEC7 633 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 LNX1Q8TBB1 728 aaPredicted RBP8.14□□□□□ -1.11
VPS4A-203ENST00000564399 FAM3CQ92520 227 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 DNASE1L2Q92874 299 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 MTRQ99707 1265 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PAAF1Q9BRP4 392 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 IER2Q9BTL4 223 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 SLC26A6Q9BXS9 759 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 GDE1Q9NZC3 331 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PPME1Q9Y570 386 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 ZFHX4Q86UP3 3567 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 PDCD11Q14690 1871 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ARID2Q68CP9 1835 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 CYP3A7-CYP3A51PA0A087WV96 503 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 SHISA7A6NL88 538 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 CHURC1-FNTBB4DL54 471 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 HRO43593 1189 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 MARCH6O60337 910 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 KIF4AO95239 1232 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 P4HBP07237 508 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 RHOP08100 348 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ARF4P18085 180 aaPredicted RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 CYP3A7P24462 503 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 PMLP29590 882 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 FNTBP49356 437 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 SRSF5Q13243 272 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 MXD4Q14582 209 aaPredicted RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 SLC5A9Q2M3M2 681 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ADCK5Q3MIX3 580 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 AASDHQ4L235 1098 aaPredicted RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 HEATR6Q6AI08 1181 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 SLC27A1Q6PCB7 646 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 MAMSTRQ6ZN01 415 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 C12orf50Q8NA57 414 aaPredicted RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ETNPPLQ8TBG4 499 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 IRF7Q92985 503 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ELSPBP1Q96BH3 223 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 TRMT61BQ9BVS5 477 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 ZFP14Q9HCL3 533 aa8.13□□□□□ -1.11
VPS4A-203ENST00000564399 DDX25Q9UHL0 483 aaKnown RBP8.13□□□□□ -1.11
VPS4A-203ENST00000564399 B4GALT5O43286 388 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 LRG1P02750 347 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 THP07101 528 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 POU2F2P09086 479 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 HMGB1P09429 215 aaKnown RBP8.12□□□□□ -1.11
VPS4A-203ENST00000564399 CPA1P15085 419 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 CEBPBP17676 345 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 PTPN2P17706 415 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 GDI1P31150 447 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 YWHABP31946 246 aaKnown RBP8.12□□□□□ -1.11
VPS4A-203ENST00000564399 ELF1P32519 619 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 CNR2P34972 360 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 SATB1Q01826 763 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 MBTD1Q05BQ5 628 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 PPP2R5CQ13362 524 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 RAB33AQ14088 237 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 KRT32Q14532 448 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 TMEM132AQ24JP5 1023 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.12□□□□□ -1.11
VPS4A-203ENST00000564399 Q6ZUG5 572 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 C4orf19Q8IY42 314 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 RASEFQ8IZ41 740 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 BRF1Q92994 677 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 CORO1BQ9BR76 489 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 LXNQ9BS40 222 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 RNF26Q9BY78 433 aaPredicted RBP8.12□□□□□ -1.11
VPS4A-203ENST00000564399 SH3GLB2Q9NR46 395 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 WRAP73Q9P2S5 460 aaPredicted RBP8.12□□□□□ -1.11
VPS4A-203ENST00000564399 PCDHA4Q9UN74 947 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 CDY1Q9Y6F8 540 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 PIAS3Q9Y6X2 628 aa8.12□□□□□ -1.11
VPS4A-203ENST00000564399 GON4LQ3T8J9 2241 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ZMYM2Q9UBW7 1377 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 PRRG1O14668 218 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 ZBTB39O15060 712 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 AXIN1O15169 862 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 SLC37A4O43826 429 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 PROS1P07225 676 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 PSMC3P17980 439 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 CCNE1P24864 410 aa8.11□□□□□ -1.11
VPS4A-203ENST00000564399 SHC2P98077 582 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms