RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	EEF2KMT	Q96G04	330 aa		11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	EPAS1	Q99814	870 aa		11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	AP1M1	Q9BXS5	423 aa		11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	AZI2	Q9H6S1	392 aa		11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	ABT1	Q9ULW3	272 aa	Known RBP	11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	STK38L	Q9Y2H1	464 aa		11.85	□□□□□ -0.51
TCF4-222	ENST00000564228	LCT	P09848	1927 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PP2D1	A8MPX8	630 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	BTBD19	C9JJ37	291 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PDHX	O00330	501 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ATP2A1	O14983	1001 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SLC37A4	O43826	429 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	EDIL3	O43854	480 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	COQ9	O75208	318 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	UNC5C	O95185	931 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SHBG	P04278	402 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SP100	P23497	879 aa	Predicted RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SREBF1	P36956	1147 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PEX5	P50542	639 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	HSD17B4	P51659	736 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	NPEPPS	P55786	919 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PTEN	P60484	403 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	DHX34	Q14147	1143 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ASIC2	Q16515	512 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SLC30A10	Q6XR72	485 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RNF207	Q6ZRF8	634 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	UNC13D	Q70J99	1090 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RBM12B	Q8IXT5	1001 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ASAP3	Q8TDY4	903 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TMEM237	Q96Q45	408 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TSG101	Q99816	390 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	LRMDA	Q9H2I8	198 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	CTTNBP2NL	Q9P2B4	639 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	DDX25	Q9UHL0	483 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PNMA3	Q9UL41	463 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	BZW2	Q9Y6E2	419 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	MROH7	Q68CQ1	1323 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	KIAA1217	Q5T5P2	1943 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PEX11A	O75192	247 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	LMNA	P02545	664 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	OR52Z1	P0C646	297 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TPBGL	P0DKB5	382 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	IMPDH2	P12268	514 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RPS6	P62753	249 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	KLHL30	Q0D2K2	578 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	LRRC23	Q53EV4	343 aa	Predicted RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	WASHC2D	Q5SRD0	308 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TRIM68	Q6AZZ1	485 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RGMB	Q6NW40	437 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RASAL3	Q86YV0	1011 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	KIF2B	Q8N4N8	673 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TPCN2	Q8NHX9	752 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	INPP5D	Q92835	1189 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	KIFAP3	Q92845	792 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	GRAMD1A	Q96CP6	724 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	RBM41	Q96IZ5	413 aa	Known RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	UIMC1	Q96RL1	719 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SYT15	Q9BQS2	421 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ERP44	Q9BS26	406 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	PACSIN1	Q9BY11	444 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SPATC1L	Q9H0A9	340 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	DPH5	Q9H2P9	285 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ACAD9	Q9H845	621 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	EHMT1	Q9H9B1	1298 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	COL20A1	Q9P218	1284 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	INTU	Q9ULD6	942 aa		11.84	□□□□□ -0.51
TCF4-222	ENST00000564228	TOMM70	O94826	608 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	ZNF76	P36508	570 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	PSMC4	P43686	418 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	RAD23B	P54727	409 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	GRM1	Q13255	1194 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	BAAT	Q14032	418 aa	Predicted RBP	11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	CALCRL	Q16602	461 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	PEX26	Q7Z412	305 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	NCAPG2	Q86XI2	1143 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	FITM2	Q8N6M3	262 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	SYTL5	Q8TDW5	730 aa	Predicted RBP	11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	PIGO	Q8TEQ8	1089 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	NAP1L3	Q99457	506 aa	Predicted RBP	11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	LSM14B	Q9BX40	385 aa	Known RBP	11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	FAM192A	Q9GZU8	254 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	TXNRD2	Q9NNW7	524 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	NLRC4	Q9NPP4	1024 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	PARP2	Q9UGN5	583 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	RPS6KL1	Q9Y6S9	549 aa		11.83	□□□□□ -0.52
TCF4-222	ENST00000564228	MARCH6	O60337	910 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	CNMD	O75829	334 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	EYA4	O95677	639 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	SETSIP	P0DME0	302 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	ITGA4	P13612	1032 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	YY1	P25490	414 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	MAGEA8	P43361	318 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	TUB	P50607	506 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	NUBP1	P53384	320 aa		11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	POLR2F	P61218	127 aa	Known RBP	11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	IFI35	P80217	286 aa	Predicted RBP	11.82	□□□□□ -0.52
TCF4-222	ENST00000564228	ORC2	Q13416	577 aa	Predicted RBP	11.82	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms