RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 RNASELQ05823 741 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 SNRNP35Q16560 246 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 TCTN1Q2MV58 587 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 CCDC40Q4G0X9 1142 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 ANO6Q4KMQ2 910 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 NOMO2Q5JPE7 1267 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 RASIP1Q5U651 963 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 TTI2Q6NXR4 508 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 LRSAM1Q6UWE0 723 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 AGMOQ6ZNB7 445 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 INTS8Q75QN2 995 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 NLRC5Q86WI3 1866 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 BRSK2Q8IWQ3 736 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 FAM186BQ8IYM0 893 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 CMTR2Q8IYT2 770 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 TMC2Q8TDI7 906 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 FAM212AQ96EL1 285 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 SAAL1Q96ER3 474 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 YME1L1Q96TA2 773 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 RAD9AQ99638 391 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 SRRTQ9BXP5 876 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 GZF1Q9H116 711 aaPredicted RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 DNAJC25Q9H1X3 360 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 TSPY26PQ9H489 355 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 NXF3Q9H4D5 531 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 THAP9Q9H5L6 903 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 AAASQ9NRG9 546 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 MTMR10Q9NXD2 777 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 RBAKQ9NYW8 714 aaPredicted RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 SZT2Q5T011 3432 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 GOLGA8IPA6NC78 632 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 GOLGA8JA6NMD2 632 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 TBKBP1A7MCY6 615 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 TISP43B9A030 160 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 TULP1O00294 542 aaPredicted RBP10.02□□□□□ -0.81
LDLR-210ENST00000559340 IKBKBO14920 756 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 INPPL1O15357 1258 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 TLL1O43897 1013 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 OFD1O75665 1012 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 DGKIO75912 1065 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 GJB5O95377 273 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 ADRB2P07550 413 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 KCNE1P15382 129 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 AKAP5P24588 427 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 ZNF165P49910 485 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 ZNF445P59923 1031 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 DEFB103AP81534 67 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 MYL5Q02045 173 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 GRIK3Q13003 919 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 RAB30Q15771 203 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 XKR4Q5GH76 650 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 C9orf50Q5SZB4 431 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 FRMD5Q7Z6J6 570 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 HERC6Q8IVU3 1022 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 ZC3H3Q8IXZ2 948 aaKnown RBP10.02□□□□□ -0.81
LDLR-210ENST00000559340 RDH13Q8NBN7 331 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 HELQQ8TDG4 1101 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 LPPQ93052 612 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 MFSD14AQ96MC6 490 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 GAD1Q99259 594 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 FUCA2Q9BTY2 467 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 HAPLN2Q9GZV7 340 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 CXXC1Q9P0U4 656 aaPredicted RBP10.02□□□□□ -0.81
LDLR-210ENST00000559340 ARMCX3Q9UH62 379 aaPredicted RBP10.02□□□□□ -0.81
LDLR-210ENST00000559340 MSRAQ9UJ68 235 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 UBQLN1Q9UMX0 589 aaKnown RBP10.02□□□□□ -0.81
LDLR-210ENST00000559340 RWDD3Q9Y3V2 267 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 HES2Q9Y543 173 aa10.02□□□□□ -0.81
LDLR-210ENST00000559340 TTC26A0AVF1 554 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 TRIM49BA6NDI0 452 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 ARL5CA6NH57 179 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 LACTBL1A8MY62 500 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 GOLGA6L19H0YKK7 550 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 FAM189A1O60320 539 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 TNNC2P02585 160 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CXCL8P10145 99 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 ATF7P17544 494 aaPredicted RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 TNNI1P19237 187 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CYP3A5P20815 502 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CDK11BP21127 795 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 PAX3P23760 479 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 TNFSF9P41273 254 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 VAMP7P51809 220 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 PMS1P54277 932 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 HTRA4P83105 476 aaPredicted RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 SPAG1Q07617 926 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CYP24A1Q07973 514 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 BTG3Q14201 252 aaPredicted RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 TMEM132DQ14C87 1099 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 PSMD6Q15008 389 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 ENOX2Q16206 610 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 DUOXA2Q1HG44 320 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 SLC10A6Q3KNW5 377 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 SEZ6Q53EL9 994 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 SPOUT1Q5T280 376 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 FAM109BQ6ICB4 259 aaPredicted RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 FAM117BQ6P1L5 589 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CRELD2Q6UXH1 353 aaPredicted RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 ALKAL1Q6UXT8 129 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CREBRFQ8IUR6 639 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms