RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PPME1Q9Y570 386 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 KIAA1549LQ6ZVL6 1849 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 ZMYM2Q9UBW7 1377 aa9.09□□□□□ -0.95
CCDC88C-214ENST00000557507 OBSL1O75147 1896 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 CASTOR2A6NHX0 329 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PRR5-ARHGAP8B1AHC4 643 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 ASAP2O43150 1006 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 TADA2AO75478 443 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 ADRB1P08588 477 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 TDGF1P13385 188 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 RPS6KB1P23443 525 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PDIA3P30101 505 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 HOXA9P31269 272 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 MAGEA9P43362 315 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 ARHGAP8P85298 464 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PFKPQ01813 784 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 CYP4A11Q02928 519 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 SPIRE1Q08AE8 756 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 CTTNQ14247 550 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PCBP1Q15365 356 aaKnown RBP eCLIP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 SLC5A9Q2M3M2 681 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 XKR9Q5GH70 373 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 FAM171A1Q5VUB5 890 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 RSPO2Q6UXX9 243 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 EXOC8Q8IYI6 725 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 FBXL16Q8N461 479 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 GPR161Q8N6U8 529 aaKnown RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 LNX1Q8TBB1 728 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 HAS1Q92839 578 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 DYDC2Q96IM9 177 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 TTPALQ9BTX7 342 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PLA2G2FQ9BZM2 168 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 SLKQ9H2G2 1235 aaPredicted RBP9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 SNX14Q9Y5W7 946 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 TSC2P49815 1807 aa9.08□□□□□ -0.96
CCDC88C-214ENST00000557507 PTGESO14684 152 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 DKC1O60832 514 aaKnown RBP eCLIP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 XYLBO75191 536 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 POU2F2P09086 479 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 SDHBP21912 280 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 GLRA2P23416 452 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 IGFBP6P24592 240 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 RPS9P46781 194 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 EVCP57679 992 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 MTAPQ13126 283 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 TUSC3Q13454 348 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 MXD4Q14582 209 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 EPHA7Q15375 998 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 NAB2Q15742 525 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 LPAL2Q16609 132 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 ST3GAL2Q16842 350 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 PABPC1LQ4VXU2 614 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 ZBTB41Q5SVQ8 909 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 AXDND1Q5T1B0 1012 aaPredicted RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 NCAPH2Q6IBW4 605 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 SLC27A1Q6PCB7 646 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 KRT25Q7Z3Z0 450 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 CEP57Q86XR8 500 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 HACE1Q8IYU2 909 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 SECISBP2LQ93073 1101 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 FAM20AQ96MK3 541 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 RTKNQ9BST9 563 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 BACH2Q9BYV9 841 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 HEBP1Q9NRV9 189 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 DNMT3BQ9UBC3 853 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 PARP2Q9UGN5 583 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 KCNJ14Q9UNX9 436 aa9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.07□□□□□ -0.96
CCDC88C-214ENST00000557507 TCHHQ07283 1943 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 TTLL13PA6NNM8 815 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 NRG2O14511 850 aaPredicted RBP9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 TBC1D4O60343 1298 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 DEXIO95424 95 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 CEBPBP17676 345 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 FCARP24071 287 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 HSPA4P34932 840 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 ARL2P36404 184 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 POU5F1BQ06416 359 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 SSRP1Q08945 709 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 SPEM2Q0P670 501 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 TOB2Q14106 344 aaPredicted RBP9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 TFDP1Q14186 410 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 OTUD6AQ7L8S5 288 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 NEK8Q86SG6 692 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 TRIM22Q8IYM9 498 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 ZNF687Q8N1G0 1237 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 MCRS1Q96EZ8 462 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 BORCS6Q96GS4 357 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 NFKBIZQ9BYH8 718 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 POLR3FQ9H1D9 316 aaPredicted RBP9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 ZSWIM4Q9H7M6 989 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 GMEB2Q9UKD1 530 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 KCNH3Q9ULD8 1083 aa9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 FASNP49327 2511 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-214ENST00000557507 FRYQ5TBA9 3013 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 A0A1B0GUA9 196 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 CCDC194A0A1B0GVG4 234 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 FAM205CA6NFA0 338 aa9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 CCNT1O60563 726 aaKnown RBP9.05□□□□□ -0.96
CCDC88C-214ENST00000557507 CDC45O75419 566 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms