RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZMIZ1Q9ULJ6 1067 aa13.84□□□□□ -0.19
SHMT2-230ENST00000557427 CARNS1A5YM72 827 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 TMEM150BA6NC51 233 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 C1QTNF9BB2RNN3 333 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 NRP1O14786 923 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 SPTLC2O15270 562 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 MAGEB2O15479 319 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 SOD2P04179 222 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 ADH1AP07327 375 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 RETP07949 1114 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 C1QTNF9P0C862 333 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 GCFC2P16383 781 aaKnown RBP13.83□□□□□ -0.2
SHMT2-230ENST00000557427 MAGEA9P43362 315 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 SAFBQ15424 915 aaKnown RBP eCLIP13.83□□□□□ -0.2
SHMT2-230ENST00000557427 GLB1LQ6UWU2 654 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 CCDC73Q6ZRK6 1079 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 POTEDQ86YR6 584 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 RNF168Q8IYW5 571 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-230ENST00000557427 HAS1Q92839 578 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 TNFRSF25Q93038 417 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 PDLIM2Q96JY6 352 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 FAM20AQ96MK3 541 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 NAP1L4Q99733 375 aaKnown RBP13.83□□□□□ -0.2
SHMT2-230ENST00000557427 PRKD2Q9BZL6 878 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 FOXP1Q9H334 677 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-230ENST00000557427 PIDD1Q9HB75 910 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 RXFP1Q9HBX9 757 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 KCNMB3Q9NPA1 279 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 MARCH5Q9NX47 278 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 CEP131Q9UPN4 1083 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 CLIC4Q9Y696 253 aa13.83□□□□□ -0.2
SHMT2-230ENST00000557427 MTCL1Q9Y4B5 1905 aaKnown RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 LRP3O75074 770 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 PPP6R2O75170 966 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 NR1I2O75469 434 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 RPS9P46781 194 aaKnown RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 ME1P48163 572 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 NTHL1P78549 312 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 FAM160A1Q05DH4 1040 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 DRP2Q13474 957 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 GNL2Q13823 731 aaKnown RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 SLC39A14Q15043 492 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 SF3A1Q15459 793 aaKnown RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 CSRP2Q16527 193 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 MTERF2Q49AM1 385 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 XKR3Q5GH77 459 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 LILRA6Q6PI73 481 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 B3GNT9Q6UX72 402 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 RSPO2Q6UXX9 243 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 AGMOQ6ZNB7 445 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 PALB2Q86YC2 1186 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 ZNF687Q8N1G0 1237 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 CELF5Q8N6W0 485 aaKnown RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 ENGASEQ8NFI3 743 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 RDM1Q8NG50 284 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 RSPH1Q8WYR4 309 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 MAP7D2Q96T17 732 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 HERC2P3Q9BVR0 1158 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 FAM126AQ9BYI3 521 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 CHST12Q9NRB3 414 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 SEPT9Q9UHD8 586 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-230ENST00000557427 PCDHA7Q9UN72 937 aa13.82□□□□□ -0.2
SHMT2-230ENST00000557427 SETXQ7Z333 2677 aaKnown RBP13.81□□□□□ -0.2
SHMT2-230ENST00000557427 TGM5O43548 720 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 ZNF623O75123 536 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 STBD1O95210 358 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 ALDH2P05091 517 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 URODP06132 367 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 FSHRP23945 695 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 TMOD1P28289 359 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 PSMC5P62195 406 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 PPP2R5CQ13362 524 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 NCAPH2Q6IBW4 605 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 TPRG1Q6ZUI0 275 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 FSIP1Q8NA03 581 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 RNF214Q8ND24 703 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 HDAC7Q8WUI4 952 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 FAM105AQ9NUU6 356 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 ZDHHC7Q9NXF8 308 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 STK39Q9UEW8 545 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 DPP7Q9UHL4 492 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 VAV3Q9UKW4 847 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 CDH7Q9ULB5 785 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 FAN1Q9Y2M0 1017 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 ZFP37Q9Y6Q3 630 aaPredicted RBP13.81□□□□□ -0.2
SHMT2-230ENST00000557427 WDFY3Q8IZQ1 3526 aa13.81□□□□□ -0.2
SHMT2-230ENST00000557427 F8W810 466 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 WNT7AO00755 349 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 TBX3O15119 743 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 HRO43593 1189 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 GAS2O43903 313 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 TXKP42681 527 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 QARSP47897 775 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 CTTNQ14247 550 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 EPHA7Q15375 998 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 CALCRLQ16602 461 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 TWF2Q6IBS0 349 aaKnown RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 PRR23BQ6ZRT6 265 aa13.8□□□□□ -0.2
SHMT2-230ENST00000557427 GRASPQ7Z6J2 395 aaPredicted RBP13.8□□□□□ -0.2
SHMT2-230ENST00000557427 NOSTRINQ8IVI9 506 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms