RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 NECAB3Q96P71 396 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 PPP1R10Q96QC0 940 aaKnown RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 HERC2P3Q9BVR0 1158 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 COLEC11Q9BWP8 271 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 ST6GALNAC4Q9H4F1 302 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 TOPORSQ9NS56 1045 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 KBTBD4Q9NVX7 518 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 FAM13BQ9NYF5 915 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 CLEC1BQ9P126 229 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 SEL1LQ9UBV2 794 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 STK39Q9UEW8 545 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 RAPGEFL1Q9UHV5 662 aa15.01□□□□□ -0.01
SHMT2-219ENST00000555563 TCF20Q9UGU0 1960 aaKnown RBP15.01□□□□□ -0.01
SHMT2-219ENST00000555563 PDCD11Q14690 1871 aaKnown RBP15□□□□□ -0.01
SHMT2-219ENST00000555563 POLR2DO15514 142 aaKnown RBP15□□□□□ -0.01
SHMT2-219ENST00000555563 PPP1R37O75864 691 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 KIF4AO95239 1232 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 CXCL14O95715 111 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 SOD2P04179 222 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 ABCD1P33897 745 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 KCNC3Q14003 757 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 HSP90AA2PQ14568 343 aaPredicted RBP15□□□□□ -0.01
SHMT2-219ENST00000555563 XKR4Q5GH76 650 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 PTCRAQ6ISU1 281 aaPredicted RBP15□□□□□ -0.01
SHMT2-219ENST00000555563 FUT10Q6P4F1 479 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 SLC39A4Q6P5W5 647 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 ZNF720Q7Z2F6 126 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 HASPINQ8TF76 798 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 MSLNLQ96KJ4 702 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 ACAP3Q96P50 834 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 FGFBP2Q9BYJ0 223 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 TRIM9Q9C026 710 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 MRPL44Q9H9J2 332 aaKnown RBP15□□□□□ -0.01
SHMT2-219ENST00000555563 OLFML3Q9NRN5 406 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 TBC1D7Q9P0N9 293 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 ADAM28Q9UKQ2 775 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 ATP6V1DQ9Y5K8 247 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 IRAK3Q9Y616 596 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 XIRP2A4UGR9 3374 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 CITO14578 2027 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 TRIP11Q15643 1979 aa15□□□□□ -0.01
SHMT2-219ENST00000555563 SMIM28A0A1B0GU29 152 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 TISP43B9A030 160 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 CLASP2O75122 1294 aaKnown RBP14.99□□□□□ -0.01
SHMT2-219ENST00000555563 URODP06132 367 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 IL9P15248 144 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 CASP5P51878 434 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 HERC4Q5GLZ8 1057 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-219ENST00000555563 ZBTB41Q5SVQ8 909 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 LLGL2Q6P1M3 1020 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 ALKAL1Q6UXT8 129 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 TAS1R1Q7RTX1 841 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 HVCN1Q96D96 273 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 ZMAT2Q96NC0 199 aaKnown RBP14.99□□□□□ -0.01
SHMT2-219ENST00000555563 IKZF4Q9H2S9 585 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 MAGEF1Q9HAY2 307 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 GOLGA2P5Q9HBQ8 144 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 PANK4Q9NVE7 773 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 CNTN3Q9P232 1028 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 CD207Q9UJ71 328 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 HCFC2Q9Y5Z7 792 aa14.99□□□□□ -0.01
SHMT2-219ENST00000555563 SF3B1O75533 1304 aaKnown RBP eCLIP14.98□□□□□ -0.015e-8■■■■■ 37.4
SHMT2-219ENST00000555563 A0A0B4J269 797 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 GRXCR2A6NFK2 248 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 C2CD2LO14523 706 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 FAM189A1O60320 539 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 GCNT3O95395 438 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 SRGAP2BP0DMP2 458 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 CXCL8P10145 99 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 MYBP10242 640 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 KCNE1P15382 129 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 TNFSF9P41273 254 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 GLUD2P49448 558 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 ASIC1P78348 528 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 SOX4Q06945 474 aaPredicted RBP14.98□□□□□ -0.01
SHMT2-219ENST00000555563 COASYQ13057 564 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 SMAD4Q13485 552 aaKnown RBP14.98□□□□□ -0.01
SHMT2-219ENST00000555563 SLC10A6Q3KNW5 377 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 PUS10Q3MIT2 529 aaKnown RBP14.98□□□□□ -0.01
SHMT2-219ENST00000555563 CCDC65Q8IXS2 484 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 SMRP1Q8NCR6 262 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 B3GALT6Q96L58 329 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 STRA6Q9BX79 667 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 GPR62Q9BZJ7 368 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 LRRC27Q9C0I9 530 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 MRPL17Q9NRX2 175 aaKnown RBP14.98□□□□□ -0.01
SHMT2-219ENST00000555563 KCNH3Q9ULD8 1083 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 TCHHQ07283 1943 aa14.98□□□□□ -0.01
SHMT2-219ENST00000555563 ANKRD63C9JTQ0 380 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 OGTO15294 1046 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 MBTPS2O43462 519 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 LILRB3O75022 631 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 TADA2AO75478 443 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 CLTAP09496 248 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 PFKFB1P16118 471 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 CLCNKBP51801 687 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 DSG1Q02413 1049 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 KCNA1Q09470 495 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 CNNM4Q6P4Q7 775 aa14.97□□□□□ -0.01
SHMT2-219ENST00000555563 TMEM184AQ6ZMB5 413 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms