RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NECTIN1Q15223 517 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 PCBP1Q15365 356 aaKnown RBP eCLIP10.74□□□□□ -0.69
SCFD1-215ENST00000555259 Q4G0T1 1027 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 UNQ6494/PRO21346Q6UXR6 183 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 FERMT3Q86UX7 667 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 HACE1Q8IYU2 909 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 BICD2Q8TD16 824 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 CEP170P1Q96L14 293 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 TRIM6Q9C030 488 aaPredicted RBP10.74□□□□□ -0.69
SCFD1-215ENST00000555259 BMP2KQ9NSY1 1161 aaPredicted RBP10.74□□□□□ -0.69
SCFD1-215ENST00000555259 LAMA5O15230 3695 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 KLF18A0A0U1RQI7 1052 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 KIF4AO95239 1232 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 CHRNB1P11230 501 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 CEBPBP17676 345 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 NCBP1Q09161 790 aaKnown RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 RAB33AQ14088 237 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 SF3A2Q15428 464 aaKnown RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 LONP2Q86WA8 852 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 EXOC8Q8IYI6 725 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 TRMT61BQ9BVS5 477 aaKnown RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 AVENQ9NQS1 362 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 RXFP3Q9NSD7 469 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 KLK14Q9P0G3 267 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 PIAS3Q9Y6X2 628 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 LOC400499M0QZD8 3231 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 DMXL2Q8TDJ6 3036 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 COL4A2P08572 1712 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 ZMYM2Q9UBW7 1377 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 K7ESF4 209 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 ASAP2O43150 1006 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 PAPSS2O95340 614 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 OR1D2P34982 312 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 RFC5P40937 340 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 QARSP47897 775 aaKnown RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 RCAN1P53805 252 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 PTENP60484 403 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 EXOSC10Q01780 885 aaKnown RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 TUSC3Q13454 348 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 PDXDC1Q6P996 788 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 RTL10Q7L3V2 364 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 MAP4K3Q8IVH8 894 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 SPEM1Q8N4L4 309 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 C12orf50Q8NA57 414 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 KDF1Q8NAX2 398 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 ETNPPLQ8TBG4 499 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 TCP11Q8WWU5 503 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 IRF7Q92985 503 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 ZFP14Q9HCL3 533 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 ZNF334Q9HCZ1 680 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 TRPV5Q9NQA5 729 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 WRAP73Q9P2S5 460 aaPredicted RBP10.73□□□□□ -0.69
SCFD1-215ENST00000555259 PPME1Q9Y570 386 aa10.73□□□□□ -0.69
SCFD1-215ENST00000555259 GREB1Q4ZG55 1949 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 CASTOR2A6NHX0 329 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 INO80B-WBP1J3KQ70 363 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 EML1O00423 815 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 NRG2O14511 850 aaPredicted RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 KCNK5O95279 499 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 TDP2O95551 362 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 ARF4P18085 180 aaPredicted RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 EMC2Q15006 297 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 CCDC6Q16204 474 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 AMHR2Q16671 573 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 FAM78AQ5JUQ0 283 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 STPG1Q5TH74 334 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 HEATR6Q6AI08 1181 aaKnown RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 CEP68Q76N32 757 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 DHX32Q7L7V1 743 aaKnown RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 TBCKQ8TEA7 893 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 LSM14BQ9BX40 385 aaKnown RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 ARRDC1-AS1Q9H2J1 176 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 PARP2Q9UGN5 583 aa10.72□□□□□ -0.69
SCFD1-215ENST00000555259 DSPP15924 2871 aaKnown RBP10.72□□□□□ -0.69
SCFD1-215ENST00000555259 VWA8A3KMH1 1905 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CYP3A7-CYP3A51PA0A087WV96 503 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CCDC196A0A1B0GTZ2 297 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 AXIN1O15169 862 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 PRPF3O43395 683 aaKnown RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 NPTXRO95502 500 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 ZNF806P0C7X5 589 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CYP3A7P24462 503 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 GDI1P31150 447 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 MBTD1Q05BQ5 628 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 ELAVL2Q12926 359 aaKnown RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 PTGDRQ13258 359 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 PRSS36Q5K4E3 855 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 SLC27A1Q6PCB7 646 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 VITQ6UXI7 678 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CDR2LQ86X02 465 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 IFNLR1Q8IU57 520 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CCDC148Q8NFR7 591 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 ASB16Q96NS5 453 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 MTRRQ9UBK8 725 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 NAP1L2Q9ULW6 460 aaPredicted RBP10.71□□□□□ -0.69
SCFD1-215ENST00000555259 CDY1Q9Y6F8 540 aa10.71□□□□□ -0.69
SCFD1-215ENST00000555259 NBEAQ8NFP9 2946 aa10.71□□□□□ -0.7
SCFD1-215ENST00000555259 TICRRQ7Z2Z1 1910 aa10.71□□□□□ -0.7
SCFD1-215ENST00000555259 FREM2Q5SZK8 3169 aa10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms