RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 HNRNPCP07910 306 aaKnown RBP eCLIP16.68■□□□□ 0.26
SYNE3-203ENST00000554873 PABPC4LP0CB38 370 aaKnown RBP16.68■□□□□ 0.26
SYNE3-203ENST00000554873 NR2F2P24468 414 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 CASP5P51878 434 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 HPCAP84074 193 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 STRN3Q13033 797 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 EDRF1Q3B7T1 1238 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 MFSD14BQ5SR56 506 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 PPP1R18Q6NYC8 613 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 KLC3Q6P597 504 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 MIGA2Q7L4E1 593 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 ZNF554Q86TJ5 538 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 TUBGCP5Q96RT8 1024 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 PSTPIP2Q9H939 334 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.68■□□□□ 0.26
SYNE3-203ENST00000554873 STX18Q9P2W9 335 aaKnown RBP16.68■□□□□ 0.26
SYNE3-203ENST00000554873 LNPEPQ9UIQ6 1025 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 NAGPAQ9UK23 515 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 SH3GLB1Q9Y371 365 aa16.68■□□□□ 0.26
SYNE3-203ENST00000554873 COL24A1Q17RW2 1714 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 IGKV6D-41A0A0C4DH26 115 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 A0A0J9YVX5 310 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 TBX10O75333 385 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 UCHL3P15374 230 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 VAV1P15498 845 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 PHEXP78562 749 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 MAPK7Q13164 816 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 MPP2Q14168 576 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 RFWD3Q6PCD5 774 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 ARMCX6Q7L4S7 300 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 LRRC43Q8N309 656 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 C17orf50Q8WW18 174 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 TSPYL2Q9H2G4 693 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-203ENST00000554873 DIS3Q9Y2L1 958 aaKnown RBP16.67■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L10C9JJH3 530 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 UFL1O94874 794 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 PSMG1O95456 288 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 CBX6O95503 412 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 BRAFP15056 766 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 YY1P25490 414 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 STAT3P40763 770 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 GABPAQ06546 454 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 LONRF1Q17RB8 773 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 CERKLQ49MI3 558 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-203ENST00000554873 ST13P4Q8IZP2 240 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-203ENST00000554873 IRGQQ8WZA9 623 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 RANBP17Q9H2T7 1088 aaKnown RBP16.67■□□□□ 0.26
SYNE3-203ENST00000554873 STK32BQ9NY57 414 aa16.67■□□□□ 0.26
SYNE3-203ENST00000554873 MED24O75448 989 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 KRT18P05783 430 aaKnown RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 IL1R1P14778 569 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 PON1P27169 355 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 SLC12A3P55017 1021 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 CDR2Q01850 454 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 PICALMQ13492 652 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ALKBH5Q6P6C2 394 aaKnown RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 RBM46Q8TBY0 533 aaKnown RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 AGBL1Q96MI9 1066 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 KRT82Q9NSB4 513 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 NKIRAS1Q9NYS0 192 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 BARX2Q9UMQ3 279 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ATF5Q9Y2D1 282 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 TNRC6CQ9HCJ0 1690 aaKnown RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ATAD5Q96QE3 1844 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 PLIN4Q96Q06 1357 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 PFASO15067 1338 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L15C9J2P7 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L13C9JLJ4 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L11C9JVI0 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L18D6R9N7 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L22D6RA61 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L17D6RBQ6 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L19D6RCP7 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L20D6RJB6 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 DDX3XO00571 662 aaKnown RBP eCLIP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ATP9BO43861 1147 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 GFPT2O94808 682 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L24Q0WX57 530 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 TMEM259Q4ZIN3 620 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ACSBG2Q5FVE4 666 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 USP17L6PQ6QN14 398 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 DSTYKQ6XUX3 929 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 PPP4R3CPQ6ZMV5 832 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 KBTBD2Q8IY47 623 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 HAUS1Q96CS2 278 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 SYNCQ9H7C4 482 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 ARMCX3Q9UH62 379 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-203ENST00000554873 AMFRQ9UKV5 643 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 GAKO14976 1311 aa16.66■□□□□ 0.26
SYNE3-203ENST00000554873 A0A0A6YYK5 440 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 TTLL1O95922 423 aa16.65■□□□□ 0.26
SYNE3-203ENST00000554873 ZFXP17010 805 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 HOXD13P35453 343 aa16.65■□□□□ 0.26
SYNE3-203ENST00000554873 PLOD1Q02809 727 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 PPP1R21Q6ZMI0 780 aa16.65■□□□□ 0.26
SYNE3-203ENST00000554873 FRMD5Q7Z6J6 570 aa16.65■□□□□ 0.26
SYNE3-203ENST00000554873 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 RTCBQ9Y3I0 505 aaKnown RBP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.65■□□□□ 0.26
SYNE3-203ENST00000554873 ATP8B3O60423 1300 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms