RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 URGCPQ8TCY9 931 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 RSPH1Q8WYR4 309 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 ZNF689Q96CS4 500 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 CEP63Q96MT8 703 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 YME1L1Q96TA2 773 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 NAT10Q9H0A0 1025 aaKnown RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 RC3H2Q9HBD1 1191 aaKnown RBP13.31□□□□□ -0.28
SHMT2-209ENST00000553949 INPP5FQ9Y2H2 1132 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 FRMD4BQ9Y2L6 1034 aa13.31□□□□□ -0.28
SHMT2-209ENST00000553949 TTC3P53804 2025 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 TTC26A0AVF1 554 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 TBKBP1A7MCY6 615 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 GRXCR1A8MXD5 290 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 LACTBL1A8MY62 500 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 MAPK13O15264 365 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 TLL1O43897 1013 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 POMCP01189 267 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 KCNE1P15382 129 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 PSMC2P35998 433 aaKnown RBP13.3□□□□□ -0.28
SHMT2-209ENST00000553949 SCNN1GP51170 649 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 RABGGTBP53611 331 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 CYP24A1Q07973 514 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 PAN2Q504Q3 1202 aaKnown RBP13.3□□□□□ -0.28
SHMT2-209ENST00000553949 NOMO2Q5JPE7 1267 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 CD302Q8IX05 232 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 CMTR2Q8IYT2 770 aaKnown RBP13.3□□□□□ -0.28
SHMT2-209ENST00000553949 ENOX1Q8TC92 643 aaKnown RBP13.3□□□□□ -0.28
SHMT2-209ENST00000553949 FAM212AQ96EL1 285 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 MFSD14AQ96MC6 490 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 RPS6KC1Q96S38 1066 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 RAD9AQ99638 391 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 MKNK1Q9BUB5 465 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 SRRTQ9BXP5 876 aaKnown RBP13.3□□□□□ -0.28
SHMT2-209ENST00000553949 MIOSQ9NXC5 875 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 CNTN3Q9P232 1028 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 KANSL3Q9P2N6 904 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 INSL6Q9Y581 213 aa13.3□□□□□ -0.28
SHMT2-209ENST00000553949 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 SMIM28A0A1B0GU29 152 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 TULP1O00294 542 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 PTGESO14684 152 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 SLC16A3O15427 465 aaKnown RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 IL18RAPO95256 599 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 FGFR1OPO95684 399 aaKnown RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 EPB41P11171 864 aaKnown RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 WNT7BP56706 349 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 SPAG1Q07617 926 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 BTG3Q14201 252 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 TPD52L1Q16890 204 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 GLRA4Q5JXX5 417 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 SPATA1Q5VX52 437 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 FILIP1Q7Z7B0 1213 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 FAM186BQ8IYM0 893 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 LRRC43Q8N309 656 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 CCDC127Q96BQ5 260 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 ZMAT2Q96NC0 199 aaKnown RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 BPIFA3Q9BQP9 254 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 MRPL9Q9BYD2 267 aaKnown RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 ASB7Q9H672 318 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 PDE11AQ9HCR9 933 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 TBC1D13Q9NVG8 400 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 PLAGL2Q9UPG8 496 aa13.29□□□□□ -0.28
SHMT2-209ENST00000553949 COLQQ9Y215 455 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-209ENST00000553949 A0A1W2PPC1 479 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 CAVIN2O95810 425 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 GNA14O95837 355 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 THP07101 528 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 NFICP08651 508 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 ZNF165P49910 485 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 ZNF445P59923 1031 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 GRIK3Q13003 919 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 PSMD6Q15008 389 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 SURF1Q15526 300 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 JADE1Q6IE81 842 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 LRSAM1Q6UWE0 723 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 INTS8Q75QN2 995 aaKnown RBP13.28□□□□□ -0.28
SHMT2-209ENST00000553949 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-209ENST00000553949 BORCS6Q96GS4 357 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 PPP1R10Q96QC0 940 aaKnown RBP13.28□□□□□ -0.28
SHMT2-209ENST00000553949 TSPAN18Q96SJ8 248 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 THAP9Q9H5L6 903 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 DERAQ9Y315 318 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 C2CD2Q9Y426 696 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 NFE2L3Q9Y4A8 694 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 PCDHA11Q9Y5I1 949 aa13.28□□□□□ -0.28
SHMT2-209ENST00000553949 LCHNA4D1U4 455 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 DLATP10515 647 aaKnown RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 KRT13P13646 458 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 MYOGP15173 224 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 PBX2P40425 430 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 MYL5Q02045 173 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 RNASELQ05823 741 aaKnown RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 TMEM132DQ14C87 1099 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 NAB2Q15742 525 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 ZBTB6Q15916 424 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 CCDC40Q4G0X9 1142 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 FRMD5Q7Z6J6 570 aa13.27□□□□□ -0.29
SHMT2-209ENST00000553949 DHX40Q8IX18 779 aaKnown RBP13.27□□□□□ -0.29
SHMT2-209ENST00000553949 EFCAB13Q8IY85 973 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms