RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TMEM62Q0P6H9 643 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 OLFML2BQ68BL8 750 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 SLFN12LQ6IEE8 588 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 ARHGEF26Q96DR7 871 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 ALS2CR12Q96Q35 445 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 PCDHB18PQ96TA0 734 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 AGPAT1Q99943 283 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 JRKLQ9Y4A0 524 aa13.75□□□□□ -0.21
VIPAS39-206ENST00000553888 RHOXF2BP0C7M4 288 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CHRNB2P17787 502 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 FGFR4P22455 802 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 SSTR3P32745 418 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 PIK3CAP42336 1068 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 TNFAIP2Q03169 654 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MAP2K5Q13163 448 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 ZACNQ401N2 412 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MARCH8Q5T0T0 291 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 VPS36Q86VN1 386 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 GPATCH11Q8N954 259 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 GOLGA1Q92805 767 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CPB2Q96IY4 423 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MS4A14Q96JA4 679 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 RHOXF2Q9BQY4 288 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 APOBEC3GQ9HC16 384 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 SETD4Q9NVD3 440 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 SNX12Q9UMY4 172 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 HYOU1Q9Y4L1 999 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 ZNF236Q9UL36 1845 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CLGNO14967 610 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 PMM2O15305 246 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 TOM1L1O75674 476 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MMEP08473 750 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 EFNA5P52803 228 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CRHR2Q13324 411 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 WHAMMP3Q1A5X7 153 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 FAM71AQ8IYT1 594 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CEP112Q8N8E3 955 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 EPS8L1Q8TE68 723 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 SHC3Q92529 594 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 EMID1Q96A84 441 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 ANO9A1A5B4 782 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MANSC4A6NHS7 340 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 FAM155AB1AL88 458 aaPredicted RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 H2AFZP0C0S5 128 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 KRT5P13647 590 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 PTENP60484 403 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CLDN10P78369 228 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 MRPS25P82663 173 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 C17orf99Q6UX52 265 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 ZPBP2Q6X784 338 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 H2AFVQ71UI9 128 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 KCNN1Q92952 543 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 OSBPL9Q96SU4 736 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 HINFPQ9BQA5 517 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 THAP2Q9H0W7 228 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 KIAA1586Q9HCI6 787 aa13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 LUC7LQ9NQ29 371 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 NOCTQ9UK39 431 aaKnown RBP13.74□□□□□ -0.21
VIPAS39-206ENST00000553888 CTAGE15A4D2H0 777 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ATMINO43313 823 aaPredicted RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 GAS2O43903 313 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PPFIA4O75335 1185 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CST3P01034 146 aaPredicted RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 SLC10A3P09131 477 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CTAGE8P0CG41 777 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 RFX1P22670 979 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 GTF2H1P32780 548 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 MFAP3P55082 362 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 BEX3Q00994 111 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 C2orf54Q08AI8 447 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PPFIA1Q13136 1202 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 GRIK4Q16099 956 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ZNF568Q3ZCX4 644 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ZNF484Q5JVG2 852 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ATF7IP2Q5U623 682 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 MTHFD1LQ6UB35 978 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CTAGE6Q86UF2 777 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CTAGE4Q8IX94 777 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ARHGAP39Q9C0H5 1083 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 MTMR12Q9C0I1 747 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 FZD8Q9H461 694 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 GINS2Q9Y248 185 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ABCD1P33897 745 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 RNASE9P60153 205 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 HIC1Q14526 733 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CREG2Q8IUH2 290 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 RNF10Q8N5U6 811 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 LINC01465Q8N7H1 131 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 CAGE1Q8TC20 777 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PNKPQ96T60 521 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PARD6BQ9BYG5 372 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ANKZF1Q9H8Y5 726 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 ABT1Q9ULW3 272 aaKnown RBP13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PPME1Q9Y570 386 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 PCDHGC5Q9Y5F6 944 aa13.73□□□□□ -0.21
VIPAS39-206ENST00000553888 SEC31AO94979 1220 aaKnown RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 ZNF865P0CJ78 1059 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 CLCN6P51797 869 aa13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 KCTD19Q17RG1 926 aaPredicted RBP13.72□□□□□ -0.21
VIPAS39-206ENST00000553888 USP37Q86T82 979 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms