RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ANKRD62A6NC57 917 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 ACKR2O00590 384 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 OGTO15294 1046 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 FTCDO95954 541 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 IRF5Q13568 498 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 TSHZ1Q6ZSZ6 1077 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 DNAAF5Q86Y56 855 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 LINC01465Q8N7H1 131 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 NPLOC4Q8TAT6 608 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 ISCUQ9H1K1 167 aa28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 SEPT11Q9NVA2 429 aaKnown RBP28.37■■■□□ 2.13
CCDC88C-205ENST00000553403 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 ABLIM1O14639 778 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 CYP26A1O43174 497 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 FAM189A1O60320 539 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 PROZP22891 400 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 PIK3CAP42336 1068 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 CLCN3P51790 818 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 SURF1Q15526 300 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 CYP4F22Q6NT55 531 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 TMCO3Q6UWJ1 677 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 SLFN11Q7Z7L1 901 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 SYCE1Q8N0S2 351 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 METTL13Q8N6R0 699 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 CALR3Q96L12 384 aaKnown RBP28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 C16orf70Q9BSU1 422 aa28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 CCDC94Q9BW85 323 aaPredicted RBP28.36■■■□□ 2.13
CCDC88C-205ENST00000553403 UTP3Q9NQZ2 479 aaKnown RBP eCLIP28.36■■■□□ 2.135e-8■■■■■ 163.4
CCDC88C-205ENST00000553403 TTLL13PA6NNM8 815 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 CES2O00748 559 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 GZMAP12544 262 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 SMPD1P17405 629 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 CHRNB2P17787 502 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 PAFAH1B1P43034 410 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 LMBRD2Q68DH5 695 aaPredicted RBP28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 NOP9Q86U38 636 aaKnown RBP28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 SAPCD2Q86UD0 394 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 NLRP4Q96MN2 994 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 TCHPQ9BT92 498 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 CCDC151A5D8V7 595 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 VNN1O95497 513 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 BIRC3Q13489 604 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 TCEAL1Q15170 157 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 MORN1Q5T089 497 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 MPZL3Q6UWV2 235 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 IFNLR1Q8IU57 520 aaPredicted RBP28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 PI4K2AQ9BTU6 479 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 CPA4Q9UI42 421 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 PTPRJQ12913 1337 aa28.35■■■□□ 2.13
CCDC88C-205ENST00000553403 TMCO5BA8MYB1 307 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 RTN2O75298 545 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 HARSP12081 509 aaKnown RBP28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 CCDC181Q5TID7 509 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 PALB2Q86YC2 1186 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 WDR49Q8IV35 697 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 DHX38Q92620 1227 aaKnown RBP28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 PTPRHQ9HD43 1115 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 TAS2R14Q9NYV8 317 aa28.34■■■□□ 2.13
CCDC88C-205ENST00000553403 RHOXF2BP0C7M4 288 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 CYP11B1P15538 503 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 PHKA2P46019 1235 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 PDE6CP51160 858 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 ZNF157P51786 506 aaPredicted RBP28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 MBTD1Q05BQ5 628 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 RPS6KA1Q15418 735 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 FAM187BQ17R55 369 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 ATF7IP2Q5U623 682 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 ZBTB33Q86T24 672 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 SLC47A2Q86VL8 602 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 MMGT1Q8N4V1 131 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 OR6J1Q8NGC5 347 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 RHOXF2Q9BQY4 288 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 ZNF446Q9NWS9 450 aa28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 ZHX1Q9UKY1 873 aaPredicted RBP28.33■■■□□ 2.13
CCDC88C-205ENST00000553403 MMP3P08254 477 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 HADHBP55084 474 aaKnown RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 IGBP1P78318 339 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 CDR2Q01850 454 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 MAP2K5Q13163 448 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 CFAP221Q4G0U5 840 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 RHOT2Q8IXI1 618 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 SLC35G2Q8TBE7 412 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 TAF4BQ92750 862 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 PRMT7Q9NVM4 692 aaPredicted RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 CPSF3Q9UKF6 684 aaKnown RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 TARSL2A2RTX5 802 aaKnown RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 H3BRB1 525 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 INO80B-WBP1J3KQ70 363 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 IGF2BP3O00425 579 aaKnown RBP eCLIP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 ATP8B1O43520 1251 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 ZRANB2O95218 330 aaKnown RBP eCLIP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 KIF4AO95239 1232 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 FTLP02792 175 aaPredicted RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 GJB1P08034 283 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 ZNF286BP0CG31 522 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 TMOD1P28289 359 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 CXCR5P32302 372 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 FMO1Q01740 532 aa28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 CC2D1AQ6P1N0 951 aaPredicted RBP28.32■■■□□ 2.12
CCDC88C-205ENST00000553403 HNRNPLLQ8WVV9 542 aaKnown RBP28.32■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms