RNA–Protein interactions for RNA: ENST00000552465.1

CACNB3-222, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, human

TSL 3

Gene CACNB3, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CACNB3-222	ENST00000552465	PDXDC1	Q6P996	788 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	CENPQ	Q7L2Z9	268 aa	Predicted RBP	18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	NPAS3	Q8IXF0	933 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	SLC7A14	Q8TBB6	771 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	POLR3F	Q9H1D9	316 aa	Predicted RBP	18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	HCFC1R1	Q9NWW0	138 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	DNMT3B	Q9UBC3	853 aa	Known RBP	18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	KCNH3	Q9ULD8	1083 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	GPR179	Q6PRD1	2367 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	COL4A3	Q01955	1670 aa		18.72	■□□□□ 0.59
CACNB3-222	ENST00000552465	TDRD15	B5MCY1	1934 aa	Known RBP	18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	PTGES	O14684	152 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	ELAVL2	Q12926	359 aa	Known RBP	18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	EARS2	Q5JPH6	523 aa	Known RBP	18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	PPP4R3CP	Q6ZMV5	832 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	SECISBP2L	Q93073	1101 aa	Known RBP	18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	EPC1	Q9H2F5	836 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	GJB4	Q9NTQ9	266 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	CYP46A1	Q9Y6A2	500 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	NCOR2	Q9Y618	2525 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	CEP250	Q9BV73	2442 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	DMXL1	Q9Y485	3027 aa		18.71	■□□□□ 0.59
CACNB3-222	ENST00000552465	PRR5-ARHGAP8	B1AHC4	643 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	NCAM2	O15394	837 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	KRT37	O76014	449 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	REC8	O95072	547 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	TH	P07101	528 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	TARS	P26639	723 aa	Known RBP	18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	OR1D2	P34982	312 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	RPS9	P46781	194 aa	Known RBP	18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	RARRES1	P49788	294 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	ARHGAP8	P85298	464 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	NAB2	Q15742	525 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	PABPC1L	Q4VXU2	614 aa	Known RBP	18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	TPRG1	Q6ZUI0	275 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	PRIMPOL	Q96LW4	560 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	CXCL16	Q9H2A7	254 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	PRMT7	Q9NVM4	692 aa	Predicted RBP	18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	SNTG2	Q9NY99	539 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	PCDHA12	Q9UN75	941 aa		18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465	SMG5	Q9UPR3	1016 aa	Known RBP	18.7	■□□□□ 0.58
CACNB3-222	ENST00000552465		A0A087WWV3	80 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	LRRIQ4	A6NIV6	560 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	ECI2	O75521	394 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	XBP1	P17861	261 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	LMNB2	Q03252	620 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	FZD5	Q13467	585 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	TSSK4	Q6SA08	328 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	RTL10	Q7L3V2	364 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	PIGO	Q8TEQ8	1089 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	ING5	Q8WYH8	240 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	CCDC43	Q96MW1	224 aa	Known RBP	18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	PLA2G2F	Q9BZM2	168 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	FZD8	Q9H461	694 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	MRPS23	Q9Y3D9	190 aa	Known RBP	18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	DOCK6	Q96HP0	2047 aa		18.69	■□□□□ 0.58
CACNB3-222	ENST00000552465	FAM205C	A6NFA0	338 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	SHISA7	A6NL88	538 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	TTLL13P	A6NNM8	815 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	TBC1D4	O60343	1298 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	CDKL5	O76039	1030 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	XRCC6	P12956	609 aa	Known RBP eCLIP	18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	FGFR3	P22607	806 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	TGM1	P22735	817 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	FAM187B	Q17R55	369 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	ZNF852	Q6ZMS4	543 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	MAEA	Q7L5Y9	396 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	MCRS1	Q96EZ8	462 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	PDZD7	Q9H5P4	517 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	GPRC5C	Q9NQ84	441 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	PRMT8	Q9NR22	394 aa	Predicted RBP	18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	GDE1	Q9NZC3	331 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	MTRR	Q9UBK8	725 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	MRPS17	Q9Y2R5	130 aa	Known RBP	18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	WDR87	Q6ZQQ6	2873 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	MYH15	Q9Y2K3	1946 aa		18.68	■□□□□ 0.58
CACNB3-222	ENST00000552465	N4BP3	O15049	544 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	USO1	O60763	962 aa	Known RBP	18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	RECQL4	O94761	1208 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	IGFBP6	P24592	240 aa	Predicted RBP	18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	SCRN1	Q12765	414 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	CDCA2	Q69YH5	1023 aa	Predicted RBP	18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	POTEH	Q6S545	545 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	TM6SF1	Q9BZW5	370 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	TTC12	Q9H892	705 aa	Predicted RBP	18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	HEBP1	Q9NRV9	189 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	CDV3	Q9UKY7	258 aa	Known RBP	18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	CDY1	Q9Y6F8	540 aa		18.67	■□□□□ 0.58
CACNB3-222	ENST00000552465	DNAH14	Q0VDD8	3507 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	ARID2	Q68CP9	1835 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	RHO	P08100	348 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	ADCY1	Q08828	1119 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	MTAP	Q13126	283 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	CALCRL	Q16602	461 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	SLC5A9	Q2M3M2	681 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	TANGO2	Q6ICL3	276 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	NOSTRIN	Q8IVI9	506 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	ZBTB8OS	Q8IWT0	167 aa		18.66	■□□□□ 0.58
CACNB3-222	ENST00000552465	RTKN	Q9BST9	563 aa		18.66	■□□□□ 0.58

Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms